Information for 7-GAAGACAAAACA (Motif 7)

A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A G T C
p-value:1e-8
log p-value:-1.948e+01
Information Content per bp:1.976
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets735.7 +/- 723.1bp
Average Position of motif in Background1544.4 +/- 1767.7bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GAAGACAAAACA
HAVAAAAMGACAAAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
G T C A T C G A T C G A C G T A G C T A C G T A T C G A T G A C A C T G C G T A A G T C C G T A C G T A T C G A G C T A A C G T A C G T

SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GAAGACAAAACA
AAAAAAGACAAA---
 A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
T C G A C T G A C G T A C G T A T C G A C G T A A C T G C G T A A G T C C G T A C G T A C T G A A C G T A C G T A C G T

IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GAAGACAAAACA
MAVAAAAAGACAAAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
G T C A C T G A T C A G C G T A G C T A T C G A T G C A T G C A C T A G G T C A A G T C C G T A C G T A T C G A C G T A A C G T A C G T

IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GAAGACAAAACA
VAWAAAGACAAA---
 A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
T C A G C G T A G C T A C T G A T G C A T G C A C T A G T G C A A G T C T C G A T C G A C T G A A C G T A C G T A C G T

JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAAGACAAAACA
AAAACGACAAAA--
 A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A C T G A T C G A C G T A A C G T A C G T

NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GAAGACAAAACA
HAVAAAACGACAAAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
G T A C T C G A T A G C C G T A C G T A C T G A T G C A T G A C A C T G C G T A A G T C C T G A C T G A T C G A C G T A A C G T A C G T

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:7
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:GAAGACAAAACA
-----AAAAACA
 A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A G T C A C G T A A G T C C G T A

IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAAGACAAAACA
NAAAAMGACAAA---
 A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
T A G C C G T A C G T A C T G A T G C A T G A C A C T G G T C A A G T C C T G A C T G A T C G A A C G T A C G T A C G T

At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAAGACAAAACA
MAAAAMGACAAA---
 A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
T G C A C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A T C G A T C G A A C G T A C G T A C G T

At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GAAGACAAAACA
CASAAAAMGACAAAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C G T A A G T C C G T A C G T A G T C A C G T A A G T C C G T A
G T A C C T G A T A G C C G T A G C T A T C G A T G C A T G A C C T A G G T C A A G T C C G T A C T G A C T G A C G T A A C G T A C G T