Information for 9-TGCACAGAGGCC (Motif 9)

A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A C T G A G T C C G T A
p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.976
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets740.0 +/- 807.8bp
Average Position of motif in Background1413.6 +/- 1740.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
TTGCACA------
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
NTGCACA------
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
C G T A C G A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
NTGCACA------
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
C T G A G C A T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

CG14718(RRM)/Drosophila_melanogaster-RNCMPT00006-PBM/HughesRNA

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGCACAGAGGCC
---CCAGATGN-
 A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
A C G T A C G T A C G T G T A C A G T C C G T A A C T G C G T A A C G T A T C G T A G C A C G T

Pr_0249(RRM)/Phytophthora_ramorum-RNCMPT00249-PBM/HughesRNA

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
TTGCACA------
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
A C G T A C G T A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NCU08034(RRM)/Neurospora_crassa-RNCMPT00209-PBM/HughesRNA

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
TAGCACAN-----
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
C G A T C G T A A C T G A G T C C G T A A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGAGGCC
ATGCCCTGAGGC-
 A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TGCACAGAGGCC---
-------AGGCCTNG
 A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PFI1695c(RRM)/Plasmodium_falciparum-RNCMPT00203-PBM/HughesRNA

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCACAGAGGCC
CCAGCACA------
 A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
A G T C A G T C C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

SNF(RRM)/Drosophila_melanogaster-RNCMPT00145-PBM/HughesRNA

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCACAGAGGCC
ATTGCACA------
 A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C A G T C
G C T A C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T