Information for 5-AGTGAGGACAAA (Motif 5)

C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A A G T C A C G T
p-value:1e-6
log p-value:-1.588e+01
Information Content per bp:1.965
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets216.7 +/- 145.3bp
Average Position of motif in Background1780.9 +/- 1829.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGTGAGGACAAA
MAAAAMGACAAA
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
T G C A C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A T C G A T C G A

SRSF1(RRM)/Homo_sapiens-RNCMPT00110-PBM/HughesRNA

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGTGAGGACAAA
---CAGGACAN-
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
A C G T A C G T A C G T G T A C C G T A A C T G A C T G C G T A A T G C G T C A T G C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGTGAGGACAAA
--TRAGGTCA--
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTGAGGACAAA
AGTGANDN----
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
C T G A T A C G A C G T C T A G C G T A T C G A C T G A C G A T A C G T A C G T A C G T A C G T

skn-1/MA0547.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGTGAGGACAAA-
AAAATGATGACAATT
 A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T
T C G A C T G A C T G A C G T A G A C T A T C G G T C A C G A T A C T G C G T A G A T C C G T A C G T A C G A T C G A T

IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGTGAGGACAAA-
HAVAAAAMGACAAAA
 A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T
G T C A T C G A T C G A C G T A G C T A C G T A T C G A T G A C A C T G C G T A A G T C C G T A C G T A T C G A G C T A

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGTGAGGACAAA
--TTAGGAC---
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
A C G T A C G T C G A T A G C T C G T A A C T G A C T G C G T A G A T C A C G T A C G T A C G T

SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGTGAGGACAAA
AAAAAAGACAAA
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
T C G A C T G A C G T A C G T A T C G A C G T A A C T G C G T A A G T C C G T A C G T A C T G A

STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGTGAGGACAAA
AGTGAVND----
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
C T G A A T C G G A C T T C A G C G T A T C G A C G A T C T A G A C G T A C G T A C G T A C G T

IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGTGAGGACAAA
VAWAAAGACAAA
 C G T A A C T G A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A
T C A G C G T A G C T A C T G A T G C A T G C A C T A G T G C A A G T C T C G A T C G A C T G A