Information for 7-TTCCTAATATAT (Motif 6)

A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
Reverse Opposite:
C T G A A C G T C G T A A C G T C G T A A C G T A C G T C G T A A C T G A C T G C G T A C T G A
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.914
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets505.4 +/- 354.7bp
Average Position of motif in Background1551.3 +/- 2044.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SHEP(RRM)/Drosophila_melanogaster-RNCMPT00174-PBM/HughesRNA

Match Rank:1
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:TTCCTAATATAT
----TAATATA-
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A C G T A C G T G A C T C G T A C G T A G C A T C G T A C G A T C G T A A C G T

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.69
Offset:6
Orientation:forward strand
Alignment:TTCCTAATATAT
------ATATA-
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C G T A A C G T C G T A A C G T

NHP6B/MA0346.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTCCTAATATAT-------
TTTATTTATATATAATATGA
 A C G T A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G A C T G C A T G C T A G A C T G A C T G C A T G C T A G C A T C G T A G C A T C G T A C G A T C G T A C G T A C G A T C T G A C A G T C T A G T G C A

SHEP(RRM)/Drosophila_melanogaster-RNCMPT00068-PBM/HughesRNA

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTCCTAATATAT
---TTAATAT--
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A C G T G A C T C G A T G T C A C G T A A C G T C G T A A C G T A C G T A C G T

PUF68(RRM)/Drosophila_melanogaster-RNCMPT00141-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTCCTAATATAT
--CCTCATA---
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A G T C G T A C G A C T G A T C G C T A A G C T C G T A A C G T A C G T A C G T

RBMS3(RRM)/Homo_sapiens-RNCMPT00057-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:6
Orientation:forward strand
Alignment:TTCCTAATATAT-
------ATATATA
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G C T C G T A A C G T C G T A A C G T G T C A

RBMS3(RRM)/Homo_sapiens-RNCMPT00173-PBM/HughesRNA

Match Rank:7
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TTCCTAATATAT
-----TATATAN
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T C G T A C G A T C G T A A T C G

MEX-5(Znf)/Caenorhabditis_elegans-RNCMPT00039-PBM/HughesRNA

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTCCTAATATAT
---ATAATAAN-
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G A T A C G T

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTCCTAATATAT
GTCCTAA-----
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
C T A G A C G T A G T C A G T C A C G T T C G A G C T A A C G T A C G T A C G T A C G T A C G T

MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTCCTAATATAT
TACCTAACWT--
 A G C T A C G T A G T C A G T C C G A T C G T A C G T A A C G T C G T A A C G T C G T A A G C T
A C G T C T G A A G T C A G T C C G A T C G T A C G T A G A T C G C A T G C A T A C G T A C G T