Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 13806)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 13036)	% of Background Sequences with Motif
SeqBias: GA-repeat	GAGAGAGAGA	1e-13	-3.009e+01	0.0000	12791.0	92.65%	11849.5	90.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-9	-2.287e+01	0.0000	5594.0	40.52%	4939.0	37.89%
SeqBias: CA-repeat	CACACACACA	1e-8	-2.021e+01	0.0000	11571.0	83.82%	10676.9	81.91%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-7	-1.701e+01	0.0000	13733.0	99.48%	12914.2	99.07%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.676e+01	0.0000	5652.0	40.94%	5048.7	38.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-7	-1.671e+01	0.0000	5386.0	39.01%	4800.8	36.83%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.649e+01	0.0000	6466.0	46.84%	5814.8	44.61%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.626e+01	0.0000	7275.0	52.70%	6579.7	50.47%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-5	-1.265e+01	0.0003	4763.0	34.50%	4261.2	32.69%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.250e+01	0.0003	3261.0	23.62%	2871.1	22.02%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.206e+01	0.0005	3923.0	28.42%	3487.8	26.76%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.192e+01	0.0005	11001.0	79.69%	10189.8	78.17%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-5	-1.190e+01	0.0005	829.0	6.01%	673.7	5.17%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.029e+01	0.0022	3563.0	25.81%	3173.2	24.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-4	-1.022e+01	0.0022	7604.0	55.08%	6960.3	53.39%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-4	-1.012e+01	0.0023	1374.0	9.95%	1170.0	8.98%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-1.011e+01	0.0023	907.0	6.57%	752.1	5.77%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-4	-9.989e+00	0.0024	2170.0	15.72%	1894.9	14.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-4	-9.949e+00	0.0024	2186.0	15.83%	1909.9	14.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-9.842e+00	0.0025	4854.0	35.16%	4379.7	33.60%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-4	-9.701e+00	0.0027	1166.0	8.45%	986.5	7.57%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-4	-9.644e+00	0.0027	12116.0	87.77%	11297.5	86.67%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-3	-8.956e+00	0.0052	11854.0	85.87%	11048.8	84.76%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.787e+00	0.0059	2130.0	15.43%	1869.5	14.34%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.731e+00	0.0060	3595.0	26.04%	3221.5	24.71%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-8.027e+00	0.0116	1704.0	12.34%	1487.0	11.41%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.706e+00	0.0418	9453.0	68.48%	8768.8	67.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-5.927e+00	0.0878	9175.0	66.46%	8516.8	65.33%
SeqBias: CG bias	SSSSSSSSSS	1e-2	-5.731e+00	0.1032	12178.0	88.21%	11399.4	87.45%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-2	-5.701e+00	0.1032	11673.0	84.56%	10911.0	83.70%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-5.514e+00	0.1198	1431.0	10.37%	1263.8	9.70%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-5.063e+00	0.1824	3560.0	25.79%	3241.0	24.86%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-4.845e+00	0.2199	6160.0	44.62%	5683.7	43.60%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-4.817e+00	0.2199	5896.0	42.71%	5435.7	41.70%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-4.565e+00	0.2741	1608.0	11.65%	1437.1	11.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-4.497e+00	0.2853	22.0	0.16%	12.2	0.09%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-4.489e+00	0.2853	560.0	4.06%	480.0	3.68%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-4.305e+00	0.3275	10753.0	77.89%	10050.4	77.10%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.226e+00	0.3452	1946.0	14.10%	1754.1	13.46%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.079e+00	0.3902	2407.0	17.44%	2184.0	16.75%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.929e+00	0.4420	4418.0	32.00%	4065.5	31.19%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-1	-3.820e+00	0.4814	12126.0	87.84%	11375.4	87.26%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-3.799e+00	0.4814	9219.0	66.78%	8599.5	65.97%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.587e+00	0.5798	11219.0	81.27%	10509.5	80.62%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.544e+00	0.5918	1386.0	10.04%	1246.5	9.56%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-3.368e+00	0.6908	589.0	4.27%	516.5	3.96%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.348e+00	0.6908	4222.0	30.58%	3894.9	29.88%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.002e+00	0.9545	8581.0	62.16%	8013.5	61.47%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-2.872e+00	1.0000	100.0	0.72%	80.2	0.62%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.722e+00	1.0000	5966.0	43.22%	5550.9	42.58%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.683e+00	1.0000	83.0	0.60%	66.0	0.51%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.494e+00	1.0000	2783.0	20.16%	2566.8	19.69%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-1	-2.467e+00	1.0000	8428.0	61.05%	7883.3	60.48%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-1	-2.426e+00	1.0000	640.0	4.64%	573.8	4.40%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.270e+00	1.0000	10495.0	76.02%	9849.2	75.56%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.165e+00	1.0000	2929.0	21.22%	2712.0	20.80%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-2.146e+00	1.0000	1637.0	11.86%	1503.3	11.53%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.128e+00	1.0000	4105.0	29.74%	3816.9	29.28%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.118e+00	1.0000	13805.0	100.00%	13033.1	99.98%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-2.108e+00	1.0000	1997.0	14.47%	1840.3	14.12%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.082e+00	1.0000	9562.0	69.26%	8969.6	68.81%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-2.076e+00	1.0000	21.0	0.15%	15.2	0.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.053e+00	1.0000	127.0	0.92%	108.8	0.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.016e+00	1.0000	4685.0	33.94%	4365.6	33.49%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.946e+00	1.0000	2213.0	16.03%	2046.0	15.70%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.937e+00	1.0000	9555.0	69.21%	8967.1	68.79%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.904e+00	1.0000	4902.0	35.51%	4573.9	35.09%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.901e+00	1.0000	147.0	1.06%	127.6	0.98%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.823e+00	1.0000	8872.0	64.27%	8324.9	63.86%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.807e+00	1.0000	11713.0	84.85%	11020.1	84.54%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.776e+00	1.0000	75.0	0.54%	63.6	0.49%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.743e+00	1.0000	2864.0	20.75%	2662.8	20.43%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.735e+00	1.0000	2868.0	20.78%	2666.8	20.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.705e+00	1.0000	2428.0	17.59%	2254.6	17.30%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.583e+00	1.0000	13803.0	99.99%	13031.2	99.97%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.412e+00	1.0000	6563.0	47.54%	6159.0	47.25%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.401e+00	1.0000	45.0	0.33%	38.2	0.29%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.325e+00	1.0000	59.0	0.43%	51.6	0.40%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.129e+00	1.0000	6101.0	44.19%	5735.5	44.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.084e+00	1.0000	410.0	2.97%	379.0	2.91%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.072e+00	1.0000	1567.0	11.35%	1465.6	11.24%
 Ik-1	NHTTGGGAATRCC	1e0	-1.059e+00	1.0000	13805.0	100.00%	13035.7	100.00%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.017e+00	1.0000	2381.0	17.25%	2233.2	17.13%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-9.403e-01	1.0000	13800.0	99.96%	13029.2	99.95%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-9.262e-01	1.0000	1945.0	14.09%	1826.2	14.01%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-8.908e-01	1.0000	635.0	4.60%	594.4	4.56%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-8.610e-01	1.0000	17.0	0.12%	15.1	0.12%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-8.551e-01	1.0000	837.0	6.06%	785.4	6.02%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-8.264e-01	1.0000	8823.0	63.91%	8323.0	63.85%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-7.848e-01	1.0000	7197.0	52.13%	6789.9	52.09%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-7.814e-01	1.0000	219.0	1.59%	205.6	1.58%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.788e-01	1.0000	10643.0	77.10%	10044.2	77.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.681e-01	1.0000	121.0	0.88%	113.3	0.87%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.435e-01	1.0000	195.0	1.41%	183.3	1.41%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.861e-01	1.0000	7548.0	54.68%	7127.8	54.68%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.737e-01	1.0000	433.0	3.14%	409.1	3.14%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.704e-01	1.0000	33.0	0.24%	31.2	0.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.628e-01	1.0000	34.0	0.25%	32.7	0.25%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-6.556e-01	1.0000	35.0	0.25%	33.4	0.26%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-6.328e-01	1.0000	9243.0	66.95%	8731.6	66.98%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-6.217e-01	1.0000	119.0	0.86%	113.2	0.87%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.456e-01	1.0000	441.0	3.19%	420.9	3.23%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.405e-01	1.0000	6078.0	44.03%	5750.0	44.11%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-5.153e-01	1.0000	2032.0	14.72%	1928.8	14.80%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-5.065e-01	1.0000	2135.0	15.47%	2026.3	15.54%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.808e-01	1.0000	7193.0	52.10%	6808.7	52.23%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-4.615e-01	1.0000	715.0	5.18%	683.9	5.25%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-4.571e-01	1.0000	83.0	0.60%	81.9	0.63%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-4.132e-01	1.0000	2538.0	18.38%	2414.2	18.52%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-4.041e-01	1.0000	432.0	3.13%	416.7	3.20%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.023e-01	1.0000	390.0	2.83%	376.8	2.89%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.996e-01	1.0000	10131.0	73.39%	9587.3	73.55%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.918e-01	1.0000	6756.0	48.94%	6404.9	49.13%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.903e-01	1.0000	2686.0	19.46%	2556.4	19.61%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.885e-01	1.0000	4420.0	32.02%	4197.1	32.20%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.684e-01	1.0000	417.0	3.02%	403.7	3.10%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-3.641e-01	1.0000	765.0	5.54%	736.0	5.65%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-3.629e-01	1.0000	9914.0	71.81%	9386.4	72.01%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-3.615e-01	1.0000	8132.0	58.91%	7706.4	59.12%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.607e-01	1.0000	67.0	0.49%	67.9	0.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.574e-01	1.0000	7537.0	54.60%	7145.6	54.82%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.502e-01	1.0000	13791.0	99.90%	13023.8	99.91%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.399e-01	1.0000	1843.0	13.35%	1762.0	13.52%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-3.305e-01	1.0000	5212.0	37.75%	4952.7	37.99%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-3.285e-01	1.0000	12.0	0.09%	13.4	0.10%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-3.249e-01	1.0000	11.0	0.08%	12.3	0.09%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-3.207e-01	1.0000	10451.0	75.70%	9896.0	75.92%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-3.083e-01	1.0000	8.0	0.06%	9.4	0.07%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-2.803e-01	1.0000	8179.0	59.25%	7760.4	59.53%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-2.799e-01	1.0000	3612.0	26.16%	3444.3	26.42%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.662e-01	1.0000	401.0	2.90%	392.0	3.01%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-2.605e-01	1.0000	5060.0	36.65%	4817.7	36.96%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-2.585e-01	1.0000	9343.0	67.68%	8860.7	67.97%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-2.452e-01	1.0000	78.0	0.57%	80.5	0.62%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.425e-01	1.0000	205.0	1.48%	205.0	1.57%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.263e-01	1.0000	702.0	5.09%	683.1	5.24%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.189e-01	1.0000	3782.0	27.40%	3613.2	27.72%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.153e-01	1.0000	2862.0	20.73%	2741.8	21.03%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.141e-01	1.0000	5573.0	40.37%	5309.2	40.73%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.126e-01	1.0000	338.0	2.45%	334.8	2.57%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.103e-01	1.0000	1318.0	9.55%	1273.4	9.77%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-2.069e-01	1.0000	4536.0	32.86%	4329.6	33.21%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.037e-01	1.0000	352.0	2.55%	348.3	2.67%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.016e-01	1.0000	34.0	0.25%	37.1	0.28%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.005e-01	1.0000	230.0	1.67%	230.6	1.77%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.933e-01	1.0000	7741.0	56.07%	7360.9	56.47%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.910e-01	1.0000	1663.0	12.05%	1604.9	12.31%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.827e-01	1.0000	784.0	5.68%	765.7	5.87%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.806e-01	1.0000	6190.0	44.84%	5898.6	45.25%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.804e-01	1.0000	6697.0	48.51%	6377.1	48.92%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-1.787e-01	1.0000	5390.0	39.04%	5142.3	39.45%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.779e-01	1.0000	427.0	3.09%	423.0	3.24%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-1.763e-01	1.0000	8320.0	60.27%	7909.8	60.68%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.757e-01	1.0000	570.0	4.13%	560.1	4.30%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.730e-01	1.0000	8139.0	58.96%	7739.1	59.37%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.539e-01	1.0000	4410.0	31.94%	4219.5	32.37%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.506e-01	1.0000	733.0	5.31%	719.7	5.52%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.502e-01	1.0000	573.0	4.15%	565.5	4.34%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.423e-01	1.0000	12.0	0.09%	15.3	0.12%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.408e-01	1.0000	450.0	3.26%	447.6	3.43%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.352e-01	1.0000	722.0	5.23%	711.0	5.45%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.302e-01	1.0000	8777.0	63.58%	8349.9	64.05%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.294e-01	1.0000	2979.0	21.58%	2866.5	21.99%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.253e-01	1.0000	9856.0	71.39%	9365.6	71.85%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.201e-01	1.0000	3599.0	26.07%	3457.6	26.52%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.199e-01	1.0000	822.0	5.95%	808.6	6.20%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.178e-01	1.0000	636.0	4.61%	629.2	4.83%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.172e-01	1.0000	128.0	0.93%	134.6	1.03%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.167e-01	1.0000	1764.0	12.78%	1711.6	13.13%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.158e-01	1.0000	5624.0	40.74%	5377.1	41.25%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.134e-01	1.0000	360.0	2.61%	362.5	2.78%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.096e-01	1.0000	445.0	3.22%	445.3	3.42%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.089e-01	1.0000	245.0	1.77%	250.8	1.92%
SeqBias: TA-repeat	TATATATATA	1e0	-1.047e-01	1.0000	7731.0	56.00%	7370.2	56.54%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.013e-01	1.0000	2073.0	15.02%	2009.8	15.42%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.007e-01	1.0000	7435.0	53.86%	7092.3	54.41%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-9.977e-02	1.0000	1228.0	8.90%	1201.9	9.22%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.742e-02	1.0000	6776.0	49.08%	6471.1	49.64%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.582e-02	1.0000	13.0	0.09%	17.8	0.14%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-9.582e-02	1.0000	13.0	0.09%	17.8	0.14%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-9.541e-02	1.0000	389.0	2.82%	392.3	3.01%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-9.294e-02	1.0000	6167.0	44.67%	5897.9	45.24%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.232e-02	1.0000	3133.0	22.69%	3021.6	23.18%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.703e-02	1.0000	3729.0	27.01%	3589.4	27.54%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-8.511e-02	1.0000	352.0	2.55%	358.0	2.75%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-8.048e-02	1.0000	5820.0	42.16%	5573.4	42.75%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-7.609e-02	1.0000	6015.0	43.57%	5759.5	44.18%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-7.604e-02	1.0000	76.0	0.55%	84.8	0.65%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.408e-02	1.0000	316.0	2.29%	323.2	2.48%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-7.340e-02	1.0000	965.0	6.99%	953.9	7.32%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-7.319e-02	1.0000	8799.0	63.74%	8387.0	64.34%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.149e-02	1.0000	133.0	0.96%	142.6	1.09%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-6.667e-02	1.0000	1693.0	12.26%	1654.5	12.69%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-6.620e-02	1.0000	1791.0	12.97%	1748.7	13.41%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-6.576e-02	1.0000	36.0	0.26%	43.9	0.34%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.216e-02	1.0000	7516.0	54.44%	7182.1	55.10%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-6.201e-02	1.0000	3080.0	22.31%	2980.7	22.87%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-6.187e-02	1.0000	3269.0	23.68%	3160.5	24.25%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-5.924e-02	1.0000	4710.0	34.12%	4530.7	34.76%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-5.867e-02	1.0000	5194.0	37.62%	4989.3	38.27%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.772e-02	1.0000	8651.0	62.67%	8253.7	63.32%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-5.575e-02	1.0000	274.0	1.98%	284.9	2.19%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-5.575e-02	1.0000	274.0	1.98%	284.0	2.18%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.568e-02	1.0000	812.0	5.88%	809.4	6.21%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-5.466e-02	1.0000	2799.0	20.28%	2715.6	20.83%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-5.212e-02	1.0000	2448.0	17.73%	2381.1	18.27%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-4.992e-02	1.0000	6095.0	44.15%	5846.6	44.85%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.714e-02	1.0000	2627.0	19.03%	2554.7	19.60%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-4.546e-02	1.0000	9511.0	68.90%	9067.1	69.56%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.135e-02	1.0000	538.0	3.90%	546.1	4.19%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-4.075e-02	1.0000	318.0	2.30%	330.7	2.54%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-3.960e-02	1.0000	4904.0	35.52%	4724.9	36.25%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-3.945e-02	1.0000	6714.0	48.63%	6437.1	49.38%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-3.930e-02	1.0000	561.0	4.06%	569.6	4.37%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-3.569e-02	1.0000	6324.0	45.81%	6071.9	46.58%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.423e-02	1.0000	2222.0	16.10%	2173.1	16.67%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.340e-02	1.0000	222.0	1.61%	236.5	1.81%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-3.291e-02	1.0000	2120.0	15.36%	2076.6	15.93%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-3.282e-02	1.0000	3269.0	23.68%	3175.0	24.36%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.140e-02	1.0000	815.0	5.90%	819.2	6.28%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.125e-02	1.0000	664.0	4.81%	672.6	5.16%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-3.093e-02	1.0000	1827.0	13.23%	1796.7	13.78%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-3.029e-02	1.0000	6048.0	43.81%	5814.5	44.60%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.006e-02	1.0000	5791.0	41.95%	5571.2	42.74%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-2.750e-02	1.0000	15.0	0.11%	22.4	0.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.716e-02	1.0000	7704.0	55.81%	7380.2	56.62%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.695e-02	1.0000	2489.0	18.03%	2433.8	18.67%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.585e-02	1.0000	665.0	4.82%	675.1	5.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.572e-02	1.0000	6285.0	45.53%	6042.6	46.35%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-2.352e-02	1.0000	8019.0	58.09%	7680.6	58.92%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-2.327e-02	1.0000	4193.0	30.37%	4061.4	31.16%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.315e-02	1.0000	4011.0	29.05%	3889.0	29.83%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.287e-02	1.0000	464.0	3.36%	479.7	3.68%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-2.251e-02	1.0000	590.0	4.27%	603.5	4.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.214e-02	1.0000	777.0	5.63%	786.1	6.03%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-2.185e-02	1.0000	6500.0	47.08%	6249.5	47.94%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.113e-02	1.0000	511.0	3.70%	526.1	4.04%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.105e-02	1.0000	1860.0	13.47%	1834.6	14.07%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-2.005e-02	1.0000	23.0	0.17%	32.6	0.25%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.921e-02	1.0000	63.0	0.46%	76.0	0.58%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.920e-02	1.0000	3066.0	22.21%	2991.7	22.95%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.908e-02	1.0000	1688.0	12.23%	1670.4	12.81%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.908e-02	1.0000	1688.0	12.23%	1670.4	12.81%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.902e-02	1.0000	2255.0	16.33%	2215.8	17.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.898e-02	1.0000	4138.0	29.97%	4013.4	30.79%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.685e-02	1.0000	3054.0	22.12%	2983.0	22.88%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.683e-02	1.0000	193.0	1.40%	211.5	1.62%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.643e-02	1.0000	6233.0	45.15%	6003.4	46.05%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.581e-02	1.0000	2761.0	20.00%	2703.4	20.74%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.562e-02	1.0000	969.0	7.02%	977.8	7.50%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.557e-02	1.0000	490.0	3.55%	508.6	3.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.524e-02	1.0000	6355.0	46.03%	6120.1	46.95%
Tal1	CATCTG	1e0	-1.481e-02	1.0000	5697.0	41.27%	5498.0	42.18%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.470e-02	1.0000	443.0	3.21%	462.5	3.55%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-1.435e-02	1.0000	5501.0	39.85%	5313.8	40.76%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-1.378e-02	1.0000	781.0	5.66%	795.8	6.10%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.151e-02	1.0000	3866.0	28.00%	3764.4	28.88%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.123e-02	1.0000	5864.0	42.48%	5662.8	43.44%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.041e-02	1.0000	3207.0	23.23%	3137.9	24.07%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.019e-02	1.0000	1749.0	12.67%	1738.1	13.33%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.015e-02	1.0000	280.0	2.03%	302.2	2.32%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.009e-02	1.0000	275.0	1.99%	297.7	2.28%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-9.640e-03	1.0000	8340.0	60.41%	8001.7	61.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.361e-03	1.0000	960.0	6.95%	974.1	7.47%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-9.330e-03	1.0000	6029.0	43.67%	5822.3	44.66%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-9.139e-03	1.0000	376.0	2.72%	399.9	3.07%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.133e-03	1.0000	681.0	4.93%	701.1	5.38%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-8.899e-03	1.0000	3179.0	23.03%	3113.9	23.89%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-8.525e-03	1.0000	6776.0	49.08%	6531.0	50.10%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.505e-03	1.0000	204.0	1.48%	226.3	1.74%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-8.077e-03	1.0000	1216.0	8.81%	1225.8	9.40%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.920e-03	1.0000	357.0	2.59%	381.2	2.92%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.847e-03	1.0000	2364.0	17.12%	2334.4	17.91%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.855e-03	1.0000	360.0	2.61%	385.0	2.95%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.609e-03	1.0000	6342.0	45.94%	6125.6	46.99%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-6.547e-03	1.0000	5519.0	39.98%	5346.8	41.02%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-6.495e-03	1.0000	690.0	5.00%	713.0	5.47%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-6.455e-03	1.0000	6786.0	49.16%	6545.8	50.21%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-6.437e-03	1.0000	5962.0	43.19%	5766.5	44.24%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.238e-03	1.0000	644.0	4.66%	668.8	5.13%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-5.896e-03	1.0000	6692.0	48.48%	6458.7	49.55%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-5.473e-03	1.0000	1345.0	9.74%	1355.4	10.40%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-5.470e-03	1.0000	4410.0	31.94%	4296.2	32.96%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-5.444e-03	1.0000	51.0	0.37%	67.5	0.52%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-5.387e-03	1.0000	1205.0	8.73%	1219.7	9.36%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.370e-03	1.0000	4417.0	32.00%	4303.1	33.01%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-5.350e-03	1.0000	857.0	6.21%	879.0	6.74%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-5.230e-03	1.0000	3341.0	24.20%	3278.0	25.15%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-5.214e-03	1.0000	424.0	3.07%	451.2	3.46%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.162e-03	1.0000	380.0	2.75%	407.5	3.13%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-5.160e-03	1.0000	4881.0	35.36%	4745.9	36.41%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-5.094e-03	1.0000	1969.0	14.26%	1960.1	15.04%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.063e-03	1.0000	1154.0	8.36%	1170.5	8.98%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-4.682e-03	1.0000	684.0	4.95%	710.8	5.45%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.655e-03	1.0000	1613.0	11.68%	1617.6	12.41%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-4.514e-03	1.0000	1494.0	10.82%	1502.7	11.53%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-4.324e-03	1.0000	2571.0	18.62%	2542.5	19.50%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-4.181e-03	1.0000	4531.0	32.82%	4416.4	33.88%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-3.764e-03	1.0000	6078.0	44.03%	5886.6	45.16%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.669e-03	1.0000	3030.0	21.95%	2985.2	22.90%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-3.339e-03	1.0000	4172.0	30.22%	4078.9	31.29%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-3.249e-03	1.0000	4182.0	30.29%	4088.8	31.37%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.239e-03	1.0000	6841.0	49.55%	6610.3	50.71%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-3.199e-03	1.0000	86.0	0.62%	107.9	0.83%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-3.141e-03	1.0000	1161.0	8.41%	1182.7	9.07%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-3.108e-03	1.0000	1249.0	9.05%	1268.9	9.73%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-2.994e-03	1.0000	2260.0	16.37%	2248.5	17.25%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.981e-03	1.0000	492.0	3.56%	523.1	4.01%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.966e-03	1.0000	445.0	3.22%	476.2	3.65%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-2.884e-03	1.0000	6591.0	47.74%	6376.7	48.92%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-2.845e-03	1.0000	7905.0	57.26%	7615.7	58.42%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-2.814e-03	1.0000	3177.0	23.01%	3130.2	24.01%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.785e-03	1.0000	6310.0	45.71%	6111.2	46.88%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.701e-03	1.0000	1498.0	10.85%	1512.5	11.60%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.685e-03	1.0000	2161.0	15.65%	2154.8	16.53%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-2.605e-03	1.0000	2368.0	17.15%	2354.1	18.06%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.597e-03	1.0000	233.0	1.69%	262.6	2.01%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.577e-03	1.0000	1072.0	7.77%	1097.1	8.42%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.498e-03	1.0000	4404.0	31.90%	4304.0	33.02%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.491e-03	1.0000	1306.0	9.46%	1326.0	10.17%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.406e-03	1.0000	3855.0	27.92%	3781.2	29.01%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.348e-03	1.0000	4942.0	35.80%	4817.7	36.96%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.295e-03	1.0000	351.0	2.54%	384.0	2.95%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-2.294e-03	1.0000	4539.0	32.88%	4434.1	34.01%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.284e-03	1.0000	2735.0	19.81%	2709.4	20.78%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-2.197e-03	1.0000	1785.0	12.93%	1793.4	13.76%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.191e-03	1.0000	1195.0	8.66%	1219.9	9.36%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-2.040e-03	1.0000	1037.0	7.51%	1065.5	8.17%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.040e-03	1.0000	782.0	5.66%	814.2	6.25%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.035e-03	1.0000	686.0	4.97%	719.0	5.52%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.983e-03	1.0000	5861.0	42.46%	5692.6	43.67%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.952e-03	1.0000	2254.0	16.33%	2248.6	17.25%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.864e-03	1.0000	4818.0	34.90%	4703.6	36.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.860e-03	1.0000	1312.0	9.50%	1335.7	10.25%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.757e-03	1.0000	1742.0	12.62%	1754.5	13.46%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.731e-03	1.0000	1168.0	8.46%	1195.9	9.17%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.705e-03	1.0000	511.0	3.70%	546.6	4.19%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.544e-03	1.0000	1175.0	8.51%	1203.9	9.24%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.502e-03	1.0000	5451.0	39.49%	5308.6	40.72%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.453e-03	1.0000	770.0	5.58%	805.7	6.18%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.259e-03	1.0000	3003.0	21.75%	2975.5	22.83%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.245e-03	1.0000	135.0	0.98%	163.5	1.25%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.180e-03	1.0000	2498.0	18.09%	2490.7	19.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.112e-03	1.0000	396.0	2.87%	433.8	3.33%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-1.083e-03	1.0000	2360.0	17.10%	2358.6	18.09%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.025e-03	1.0000	8597.0	62.27%	8282.4	63.54%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-9.950e-04	1.0000	2908.0	21.06%	2887.4	22.15%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-9.900e-04	1.0000	3527.0	25.55%	3481.1	26.70%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-9.730e-04	1.0000	2890.0	20.93%	2870.5	22.02%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-9.370e-04	1.0000	166.0	1.20%	197.5	1.51%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-9.290e-04	1.0000	4008.0	29.03%	3942.1	30.24%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-9.250e-04	1.0000	5971.0	43.25%	5809.4	44.57%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-8.710e-04	1.0000	5489.0	39.76%	5353.7	41.07%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-8.670e-04	1.0000	796.0	5.77%	835.3	6.41%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.340e-04	1.0000	82.0	0.59%	107.7	0.83%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-8.220e-04	1.0000	2071.0	15.00%	2082.6	15.98%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-8.220e-04	1.0000	408.0	2.96%	447.0	3.43%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-8.060e-04	1.0000	5708.0	41.35%	5562.8	42.67%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-7.850e-04	1.0000	3294.0	23.86%	3261.9	25.02%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.760e-04	1.0000	3073.0	22.26%	3049.5	23.39%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.600e-04	1.0000	2225.0	16.12%	2232.5	17.13%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.170e-04	1.0000	5916.0	42.85%	5761.0	44.19%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-7.160e-04	1.0000	4140.0	29.99%	4072.6	31.24%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-6.760e-04	1.0000	6085.0	44.08%	5922.2	45.43%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-6.460e-04	1.0000	2255.0	16.33%	2263.8	17.37%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-6.430e-04	1.0000	3010.0	21.80%	2991.8	22.95%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.390e-04	1.0000	2801.0	20.29%	2790.7	21.41%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.110e-04	1.0000	423.0	3.06%	464.9	3.57%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-5.980e-04	1.0000	6437.0	46.63%	6257.6	48.00%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-5.520e-04	1.0000	244.0	1.77%	281.1	2.16%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-5.450e-04	1.0000	740.0	5.36%	783.8	6.01%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-5.270e-04	1.0000	1248.0	9.04%	1285.2	9.86%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.050e-04	1.0000	3708.0	26.86%	3664.2	28.11%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-4.960e-04	1.0000	855.0	6.19%	898.1	6.89%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.810e-04	1.0000	2482.0	17.98%	2486.8	19.08%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.530e-04	1.0000	1093.0	7.92%	1134.9	8.71%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-4.520e-04	1.0000	7436.0	53.86%	7204.2	55.27%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.410e-04	1.0000	200.0	1.45%	236.4	1.81%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-4.180e-04	1.0000	5577.0	40.40%	5448.7	41.80%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.140e-04	1.0000	6229.0	45.12%	6066.3	46.54%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.120e-04	1.0000	5814.0	42.12%	5673.6	43.52%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-3.980e-04	1.0000	1479.0	10.71%	1514.4	11.62%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.970e-04	1.0000	349.0	2.53%	391.4	3.00%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.890e-04	1.0000	1045.0	7.57%	1088.1	8.35%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-3.880e-04	1.0000	526.0	3.81%	571.1	4.38%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-3.870e-04	1.0000	4556.0	33.00%	4478.5	34.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.710e-04	1.0000	5395.0	39.08%	5277.7	40.49%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-3.640e-04	1.0000	3128.0	22.66%	3112.7	23.88%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-3.540e-04	1.0000	473.0	3.43%	518.4	3.98%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-3.430e-04	1.0000	2395.0	17.35%	2406.7	18.46%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.410e-04	1.0000	356.0	2.58%	399.9	3.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.410e-04	1.0000	356.0	2.58%	399.6	3.07%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.360e-04	1.0000	1260.0	9.13%	1301.6	9.98%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-3.340e-04	1.0000	2837.0	20.55%	2833.8	21.74%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-3.180e-04	1.0000	48.0	0.35%	71.8	0.55%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-3.170e-04	1.0000	1968.0	14.26%	1993.4	15.29%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-3.130e-04	1.0000	5623.0	40.73%	5496.6	42.17%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.030e-04	1.0000	837.0	6.06%	884.5	6.79%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-2.870e-04	1.0000	186.0	1.35%	223.1	1.71%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-2.670e-04	1.0000	3533.0	25.59%	3505.3	26.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.630e-04	1.0000	2892.0	20.95%	2889.4	22.17%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.560e-04	1.0000	5325.0	38.57%	5216.8	40.02%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.510e-04	1.0000	2323.0	16.83%	2340.5	17.95%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.490e-04	1.0000	2026.0	14.68%	2052.5	15.75%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-2.470e-04	1.0000	1769.0	12.81%	1802.3	13.83%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.350e-04	1.0000	13017.0	94.29%	12377.1	94.95%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-2.130e-04	1.0000	3987.0	28.88%	3943.6	30.25%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.100e-04	1.0000	4037.0	29.24%	3991.2	30.62%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.020e-04	1.0000	1354.0	9.81%	1398.6	10.73%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.890e-04	1.0000	1877.0	13.60%	1910.9	14.66%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.790e-04	1.0000	5328.0	38.59%	5224.1	40.08%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.780e-04	1.0000	5764.0	41.75%	5638.9	43.26%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.700e-04	1.0000	218.0	1.58%	259.1	1.99%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.660e-04	1.0000	1852.0	13.42%	1887.3	14.48%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.590e-04	1.0000	750.0	5.43%	803.0	6.16%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.440e-04	1.0000	1232.0	8.92%	1281.1	9.83%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.340e-04	1.0000	4791.0	34.70%	4717.7	36.19%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.310e-04	1.0000	916.0	6.64%	969.5	7.44%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-1.230e-04	1.0000	6522.0	47.24%	6361.3	48.80%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.210e-04	1.0000	457.0	3.31%	508.3	3.90%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.190e-04	1.0000	5836.0	42.27%	5712.0	43.82%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.180e-04	1.0000	577.0	4.18%	630.1	4.83%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.170e-04	1.0000	6070.0	43.97%	5934.8	45.53%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.140e-04	1.0000	3198.0	23.17%	3194.4	24.51%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.110e-04	1.0000	2990.0	21.66%	2994.8	22.97%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.090e-04	1.0000	258.0	1.87%	303.6	2.33%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.070e-04	1.0000	4707.0	34.10%	4640.3	35.60%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.060e-04	1.0000	4063.0	29.43%	4025.1	30.88%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.030e-04	1.0000	1419.0	10.28%	1468.7	11.27%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.030e-04	1.0000	870.0	6.30%	925.1	7.10%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.000e-04	1.0000	692.0	5.01%	747.2	5.73%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.000e-04	1.0000	920.0	6.66%	975.5	7.48%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-9.600e-05	1.0000	1655.0	11.99%	1700.7	13.05%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-9.300e-05	1.0000	1414.0	10.24%	1464.1	11.23%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-9.100e-05	1.0000	3349.0	24.26%	3342.9	25.64%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-9.000e-05	1.0000	5199.0	37.66%	5111.5	39.21%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-8.500e-05	1.0000	5832.0	42.25%	5713.2	43.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-8.400e-05	1.0000	6924.0	50.16%	6746.5	51.75%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.600e-05	1.0000	716.0	5.19%	773.5	5.93%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-7.200e-05	1.0000	1017.0	7.37%	1074.2	8.24%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-7.100e-05	1.0000	5992.0	43.40%	5867.1	45.01%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-6.700e-05	1.0000	1938.0	14.04%	1980.3	15.19%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.700e-05	1.0000	205.0	1.48%	249.7	1.92%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-6.500e-05	1.0000	2141.0	15.51%	2178.9	16.72%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-6.400e-05	1.0000	3589.0	26.00%	3577.6	27.44%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.000e-05	1.0000	266.0	1.93%	315.0	2.42%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-6.000e-05	1.0000	645.0	4.67%	703.5	5.40%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-5.900e-05	1.0000	6582.0	47.68%	6428.5	49.31%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-5.700e-05	1.0000	1435.0	10.39%	1489.5	11.43%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-5.400e-05	1.0000	1576.0	11.42%	1628.6	12.49%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-5.300e-05	1.0000	2651.0	19.20%	2675.5	20.52%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-5.000e-05	1.0000	1377.0	9.97%	1433.2	10.99%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-4.800e-05	1.0000	4850.0	35.13%	4788.0	36.73%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-4.700e-05	1.0000	5272.0	38.19%	5189.9	39.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.700e-05	1.0000	3184.0	23.06%	3191.9	24.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.500e-05	1.0000	7331.0	53.10%	7138.6	54.76%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.500e-05	1.0000	666.0	4.82%	726.2	5.57%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.300e-05	1.0000	774.0	5.61%	835.9	6.41%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-4.200e-05	1.0000	1828.0	13.24%	1878.0	14.41%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-4.200e-05	1.0000	3689.0	26.72%	3678.9	28.22%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.600e-05	1.0000	3810.0	27.60%	3796.8	29.13%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-3.500e-05	1.0000	5926.0	42.93%	5814.8	44.61%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-3.500e-05	1.0000	2540.0	18.40%	2572.1	19.73%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-3.400e-05	1.0000	396.0	2.87%	452.8	3.47%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.300e-05	1.0000	2964.0	21.47%	2983.5	22.89%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.300e-05	1.0000	418.0	3.03%	475.8	3.65%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-3.200e-05	1.0000	796.0	5.77%	859.7	6.60%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-3.100e-05	1.0000	252.0	1.83%	302.3	2.32%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-3.000e-05	1.0000	3245.0	23.51%	3255.8	24.98%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.000e-05	1.0000	562.0	4.07%	623.9	4.79%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.900e-05	1.0000	923.0	6.69%	987.3	7.57%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.800e-05	1.0000	215.0	1.56%	263.8	2.02%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-2.800e-05	1.0000	2715.0	19.67%	2744.5	21.05%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.600e-05	1.0000	2341.0	16.96%	2382.8	18.28%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.500e-05	1.0000	1173.0	8.50%	1237.2	9.49%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-2.400e-05	1.0000	1591.0	11.52%	1650.7	12.66%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-2.400e-05	1.0000	2107.0	15.26%	2156.0	16.54%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-2.400e-05	1.0000	545.0	3.95%	607.2	4.66%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.300e-05	1.0000	302.0	2.19%	356.5	2.73%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.300e-05	1.0000	3518.0	25.48%	3521.1	27.01%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-2.100e-05	1.0000	2965.0	21.48%	2989.9	22.94%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-2.000e-05	1.0000	312.0	2.26%	367.7	2.82%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.000e-05	1.0000	274.0	1.98%	328.0	2.52%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.000e-05	1.0000	1667.0	12.08%	1726.8	13.25%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-1.900e-05	1.0000	3393.0	24.58%	3403.0	26.11%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.900e-05	1.0000	2818.0	20.41%	2848.4	21.85%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.800e-05	1.0000	2708.0	19.62%	2742.4	21.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.600e-05	1.0000	5292.0	38.33%	5222.8	40.07%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-1.600e-05	1.0000	1422.0	10.30%	1487.2	11.41%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.500e-05	1.0000	2307.0	16.71%	2355.0	18.07%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.500e-05	1.0000	2169.0	15.71%	2220.9	17.04%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.400e-05	1.0000	2332.0	16.89%	2379.7	18.26%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.400e-05	1.0000	7263.0	52.61%	7090.0	54.39%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.300e-05	1.0000	2870.0	20.79%	2902.6	22.27%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.300e-05	1.0000	530.0	3.84%	595.4	4.57%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.200e-05	1.0000	1856.0	13.44%	1916.4	14.70%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.200e-05	1.0000	841.0	6.09%	911.8	6.99%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.200e-05	1.0000	4737.0	34.31%	4697.1	36.03%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.200e-05	1.0000	4141.0	30.00%	4127.1	31.66%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.200e-05	1.0000	2973.0	21.54%	3004.0	23.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.100e-05	1.0000	185.0	1.34%	234.8	1.80%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.000e-05	1.0000	1269.0	9.19%	1339.1	10.27%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.000e-05	1.0000	1460.0	10.58%	1529.0	11.73%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.000e-05	1.0000	2238.0	16.21%	2291.8	17.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.000e-05	1.0000	2037.0	14.76%	2095.2	16.07%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.000e-05	1.0000	810.0	5.87%	881.9	6.76%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-9.000e-06	1.0000	138.0	1.00%	183.4	1.41%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-9.000e-06	1.0000	1893.0	13.71%	1956.0	15.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.000e-06	1.0000	1641.0	11.89%	1708.1	13.10%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.000e-06	1.0000	6026.0	43.65%	5927.3	45.47%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-8.000e-06	1.0000	2929.0	21.22%	2964.6	22.74%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-8.000e-06	1.0000	2508.0	18.17%	2556.6	19.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.000e-06	1.0000	2878.0	20.85%	2915.7	22.37%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-8.000e-06	1.0000	3161.0	22.90%	3189.5	24.47%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-8.000e-06	1.0000	2559.0	18.54%	2606.3	19.99%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.000e-06	1.0000	1960.0	14.20%	2022.8	15.52%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-7.000e-06	1.0000	4315.0	31.26%	4299.6	32.98%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-7.000e-06	1.0000	1522.0	11.02%	1593.0	12.22%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.000e-06	1.0000	4724.0	34.22%	4691.1	35.99%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-6.000e-06	1.0000	3583.0	25.95%	3598.1	27.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.000e-06	1.0000	2529.0	18.32%	2579.5	19.79%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-6.000e-06	1.0000	3774.0	27.34%	3782.3	29.01%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.000e-06	1.0000	2870.0	20.79%	2910.6	22.33%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.000e-06	1.0000	714.0	5.17%	787.3	6.04%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-5.000e-06	1.0000	1465.0	10.61%	1538.7	11.80%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-5.000e-06	1.0000	5256.0	38.07%	5201.6	39.90%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-5.000e-06	1.0000	421.0	3.05%	487.8	3.74%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-5.000e-06	1.0000	2078.0	15.05%	2141.6	16.43%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-5.000e-06	1.0000	2732.0	19.79%	2779.6	21.32%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-4.000e-06	1.0000	2260.0	16.37%	2320.6	17.80%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-4.000e-06	1.0000	5620.0	40.71%	5550.1	42.58%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.000e-06	1.0000	4008.0	29.03%	4011.1	30.77%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-4.000e-06	1.0000	1637.0	11.86%	1710.5	13.12%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-4.000e-06	1.0000	3618.0	26.21%	3637.7	27.91%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-4.000e-06	1.0000	3992.0	28.92%	3997.2	30.66%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-4.000e-06	1.0000	4273.0	30.95%	4267.9	32.74%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-3.000e-06	1.0000	2833.0	20.52%	2880.1	22.09%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-3.000e-06	1.0000	4168.0	30.19%	4167.3	31.97%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-3.000e-06	1.0000	993.0	7.19%	1072.1	8.22%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-3.000e-06	1.0000	2781.0	20.14%	2830.5	21.71%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.000e-06	1.0000	4061.0	29.42%	4065.3	31.19%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.000e-06	1.0000	1841.0	13.34%	1913.6	14.68%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-3.000e-06	1.0000	3575.0	25.90%	3598.7	27.61%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-3.000e-06	1.0000	5598.0	40.55%	5533.3	42.45%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-3.000e-06	1.0000	2873.0	20.81%	2921.7	22.41%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.000e-06	1.0000	3749.0	27.16%	3768.0	28.91%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-3.000e-06	1.0000	372.0	2.69%	439.4	3.37%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-3.000e-06	1.0000	4065.0	29.45%	4071.3	31.23%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.000e-06	1.0000	3261.0	23.62%	3297.1	25.29%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.000e-06	1.0000	2645.0	19.16%	2701.9	20.73%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.000e-06	1.0000	1293.0	9.37%	1374.8	10.55%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-2.000e-06	1.0000	2658.0	19.25%	2714.4	20.82%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.000e-06	1.0000	1512.0	10.95%	1592.1	12.21%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.000e-06	1.0000	3030.0	21.95%	3076.2	23.60%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-2.000e-06	1.0000	4599.0	33.31%	4586.4	35.18%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-2.000e-06	1.0000	80.0	0.58%	122.0	0.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.000e-06	1.0000	5828.0	42.22%	5757.1	44.16%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.000e-06	1.0000	5042.0	36.52%	5010.0	38.43%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.000e-06	1.0000	439.0	3.18%	511.9	3.93%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.000e-06	1.0000	3326.0	24.09%	3364.1	25.81%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-2.000e-06	1.0000	305.0	2.21%	370.8	2.84%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-2.000e-06	1.0000	1283.0	9.29%	1367.0	10.49%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.000e-06	1.0000	3459.0	25.06%	3494.2	26.80%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.000e-06	1.0000	5076.0	36.77%	5045.6	38.71%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.000e-06	1.0000	2926.0	21.20%	2979.8	22.86%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.000e-06	1.0000	612.0	4.43%	691.3	5.30%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-1.000e-06	1.0000	815.0	5.90%	898.3	6.89%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.000e-06	1.0000	3865.0	28.00%	3886.2	29.81%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.000e-06	1.0000	4415.0	31.98%	4414.9	33.87%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.000e-06	1.0000	993.0	7.19%	1078.1	8.27%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.000e-06	1.0000	969.0	7.02%	1054.3	8.09%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.000e-06	1.0000	3960.0	28.69%	3978.3	30.52%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.000e-06	1.0000	6467.0	46.85%	6367.1	48.84%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.000e-06	1.0000	2295.0	16.62%	2366.3	18.15%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.000e-06	1.0000	5486.0	39.74%	5437.9	41.72%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.000e-06	1.0000	7268.0	52.65%	7123.3	54.64%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.000e-06	1.0000	1128.0	8.17%	1214.4	9.32%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.000e-06	1.0000	1120.0	8.11%	1206.2	9.25%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.000e-06	1.0000	1069.0	7.74%	1155.1	8.86%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.000e-06	1.0000	90.0	0.65%	134.9	1.03%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.000e-06	1.0000	2377.0	17.22%	2447.7	18.78%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.000e-06	1.0000	1507.0	10.92%	1592.7	12.22%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.000e-06	1.0000	3316.0	24.02%	3359.2	25.77%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.000e-06	1.0000	4212.0	30.51%	4222.3	32.39%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.000e-06	1.0000	4248.0	30.77%	4257.3	32.66%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.000e-06	1.0000	3192.0	23.12%	3241.0	24.86%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.000e-06	1.0000	2885.0	20.90%	2943.1	22.58%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.000e-06	1.0000	859.0	6.22%	945.4	7.25%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-1.000e-06	1.0000	951.0	6.89%	1038.9	7.97%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-1.000e-06	1.0000	5394.0	39.07%	5353.5	41.07%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.000e-06	1.0000	2728.0	19.76%	2791.5	21.41%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.000e-06	1.0000	2503.0	18.13%	2572.4	19.73%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.000e-06	1.0000	2181.0	15.80%	2258.7	17.33%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.000e-06	1.0000	1546.0	11.20%	1633.9	12.53%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.000e-06	1.0000	822.0	5.95%	909.6	6.98%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.000e-06	1.0000	4359.0	31.58%	4367.6	33.50%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.000e-06	1.0000	748.0	5.42%	834.2	6.40%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.000e-06	1.0000	1337.0	9.68%	1427.0	10.95%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.000e-06	1.0000	5792.0	41.96%	5735.2	44.00%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.000e-06	1.0000	2659.0	19.26%	2727.2	20.92%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.000e-06	1.0000	5333.0	38.63%	5299.1	40.65%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.000e-06	1.0000	1017.0	7.37%	1107.6	8.50%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.000e-06	1.0000	3068.0	22.22%	3125.6	23.98%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.000e-06	1.0000	6427.0	46.56%	6338.3	48.62%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.000e-06	1.0000	1700.0	12.31%	1788.8	13.72%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.000e-06	1.0000	3268.0	23.67%	3319.7	25.47%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.000e-06	1.0000	378.0	2.74%	452.9	3.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.000e-06	1.0000	378.0	2.74%	452.9	3.47%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.000e-06	1.0000	7080.0	51.29%	6956.0	53.36%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.000e-06	1.0000	4267.0	30.91%	4282.8	32.85%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-0.000e+00	1.0000	1123.0	8.13%	1215.8	9.33%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	3375.0	24.45%	3424.4	26.27%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-0.000e+00	1.0000	1032.0	7.48%	1124.9	8.63%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-0.000e+00	1.0000	5642.0	40.87%	5597.3	42.94%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-0.000e+00	1.0000	2592.0	18.78%	2666.5	20.46%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-0.000e+00	1.0000	1702.0	12.33%	1795.0	13.77%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-0.000e+00	1.0000	1424.0	10.32%	1519.3	11.65%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-0.000e+00	1.0000	2577.0	18.67%	2654.1	20.36%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-0.000e+00	1.0000	6025.0	43.64%	5965.9	45.77%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-0.000e+00	1.0000	550.0	3.98%	635.7	4.88%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-0.000e+00	1.0000	2024.0	14.66%	2113.8	16.22%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-0.000e+00	1.0000	4790.0	34.70%	4790.7	36.75%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-0.000e+00	1.0000	393.0	2.85%	471.9	3.62%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-0.000e+00	1.0000	535.0	3.88%	620.1	4.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	1737.0	12.58%	1831.8	14.05%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-0.000e+00	1.0000	2973.0	21.54%	3041.6	23.33%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-0.000e+00	1.0000	2314.0	16.76%	2399.1	18.40%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	792.0	5.74%	885.5	6.79%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-0.000e+00	1.0000	4272.0	30.95%	4296.2	32.96%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-0.000e+00	1.0000	241.0	1.75%	309.5	2.37%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-0.000e+00	1.0000	802.0	5.81%	896.9	6.88%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	4502.0	32.61%	4518.8	34.66%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-0.000e+00	1.0000	474.0	3.43%	558.9	4.29%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	2907.0	21.06%	2980.6	22.86%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-0.000e+00	1.0000	767.0	5.56%	861.9	6.61%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-0.000e+00	1.0000	1016.0	7.36%	1114.2	8.55%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-0.000e+00	1.0000	2311.0	16.74%	2399.9	18.41%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-0.000e+00	1.0000	2547.0	18.45%	2631.0	20.18%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-0.000e+00	1.0000	2241.0	16.23%	2331.8	17.89%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-0.000e+00	1.0000	1360.0	9.85%	1460.5	11.20%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-0.000e+00	1.0000	3530.0	25.57%	3585.9	27.51%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-0.000e+00	1.0000	880.0	6.37%	977.9	7.50%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-0.000e+00	1.0000	1154.0	8.36%	1254.4	9.62%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-0.000e+00	1.0000	3918.0	28.38%	3960.2	30.38%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-0.000e+00	1.0000	2777.0	20.12%	2856.8	21.92%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-0.000e+00	1.0000	3512.0	25.44%	3569.9	27.39%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-0.000e+00	1.0000	3604.0	26.11%	3658.6	28.07%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-0.000e+00	1.0000	2000.0	14.49%	2096.5	16.08%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	2653.0	19.22%	2736.6	20.99%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-0.000e+00	1.0000	1326.0	9.61%	1428.6	10.96%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	2097.0	15.19%	2192.9	16.82%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-0.000e+00	1.0000	541.0	3.92%	630.9	4.84%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-0.000e+00	1.0000	3221.0	23.33%	3289.3	25.23%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-0.000e+00	1.0000	788.0	5.71%	885.7	6.79%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-0.000e+00	1.0000	2495.0	18.07%	2583.8	19.82%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-0.000e+00	1.0000	605.0	4.38%	697.8	5.35%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-0.000e+00	1.0000	2042.0	14.79%	2139.0	16.41%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-0.000e+00	1.0000	909.0	6.58%	1009.8	7.75%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-0.000e+00	1.0000	454.0	3.29%	540.6	4.15%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-0.000e+00	1.0000	162.0	1.17%	224.5	1.72%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-0.000e+00	1.0000	4142.0	30.00%	4181.4	32.08%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-0.000e+00	1.0000	833.0	6.03%	933.2	7.16%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	676.0	4.90%	772.6	5.93%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-0.000e+00	1.0000	3440.0	24.92%	3505.6	26.89%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-0.000e+00	1.0000	990.0	7.17%	1093.6	8.39%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	1675.0	12.13%	1779.5	13.65%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-0.000e+00	1.0000	4858.0	35.19%	4869.9	37.36%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-0.000e+00	1.0000	3698.0	26.79%	3755.7	28.81%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-0.000e+00	1.0000	970.0	7.03%	1073.3	8.23%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-0.000e+00	1.0000	631.0	4.57%	726.3	5.57%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-0.000e+00	1.0000	1983.0	14.36%	2084.7	15.99%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-0.000e+00	1.0000	2748.0	19.91%	2834.6	21.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	270.0	1.96%	345.5	2.65%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-0.000e+00	1.0000	730.0	5.29%	829.7	6.36%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-0.000e+00	1.0000	1020.0	7.39%	1125.8	8.64%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-0.000e+00	1.0000	2520.0	18.25%	2613.2	20.05%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-0.000e+00	1.0000	277.0	2.01%	354.0	2.72%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-0.000e+00	1.0000	3473.0	25.16%	3541.6	27.17%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-0.000e+00	1.0000	1289.0	9.34%	1397.8	10.72%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-0.000e+00	1.0000	1517.0	10.99%	1625.8	12.47%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	2069.0	14.99%	2172.5	16.67%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-0.000e+00	1.0000	709.0	5.14%	809.6	6.21%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	1323.0	9.58%	1432.9	10.99%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-0.000e+00	1.0000	1269.0	9.19%	1378.2	10.57%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-0.000e+00	1.0000	5165.0	37.41%	5169.7	39.66%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-0.000e+00	1.0000	1474.0	10.68%	1584.8	12.16%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-0.000e+00	1.0000	1652.0	11.97%	1762.4	13.52%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-0.000e+00	1.0000	1379.0	9.99%	1490.1	11.43%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-0.000e+00	1.0000	4465.0	32.34%	4501.9	34.54%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	2907.0	21.06%	2996.9	22.99%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-0.000e+00	1.0000	952.0	6.90%	1060.2	8.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-0.000e+00	1.0000	4420.0	32.02%	4459.4	34.21%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-0.000e+00	1.0000	2571.0	18.62%	2669.7	20.48%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-0.000e+00	1.0000	1254.0	9.08%	1366.7	10.48%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	7712.0	55.86%	7582.2	58.16%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-0.000e+00	1.0000	2570.0	18.62%	2669.3	20.48%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-0.000e+00	1.0000	3299.0	23.90%	3379.7	25.93%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-0.000e+00	1.0000	1014.0	7.35%	1124.8	8.63%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-0.000e+00	1.0000	3091.0	22.39%	3178.7	24.38%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-0.000e+00	1.0000	921.0	6.67%	1030.4	7.90%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-0.000e+00	1.0000	3587.0	25.98%	3660.0	28.08%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	285.0	2.06%	365.5	2.80%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-0.000e+00	1.0000	4726.0	34.23%	4756.0	36.48%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-0.000e+00	1.0000	1541.0	11.16%	1655.0	12.70%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	4262.0	30.87%	4311.9	33.08%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-0.000e+00	1.0000	2777.0	20.12%	2874.8	22.05%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-0.000e+00	1.0000	3671.0	26.59%	3743.4	28.72%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-0.000e+00	1.0000	1217.0	8.82%	1333.0	10.23%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	1434.0	10.39%	1550.2	11.89%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-0.000e+00	1.0000	1021.0	7.40%	1134.5	8.70%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-0.000e+00	1.0000	864.0	6.26%	974.7	7.48%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-0.000e+00	1.0000	2097.0	15.19%	2209.9	16.95%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	4271.0	30.94%	4324.0	33.17%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-0.000e+00	1.0000	1903.0	13.78%	2018.6	15.49%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-0.000e+00	1.0000	3397.0	24.61%	3480.1	26.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	2648.0	19.18%	2751.5	21.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	4883.0	35.37%	4911.6	37.68%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-0.000e+00	1.0000	1260.0	9.13%	1378.0	10.57%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	371.0	2.69%	461.2	3.54%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-0.000e+00	1.0000	976.0	7.07%	1091.0	8.37%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-0.000e+00	1.0000	328.0	2.38%	415.0	3.18%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-0.000e+00	1.0000	1066.0	7.72%	1183.1	9.08%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-0.000e+00	1.0000	3193.0	23.13%	3286.2	25.21%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	2202.0	15.95%	2317.2	17.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-0.000e+00	1.0000	1161.0	8.41%	1280.8	9.83%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-0.000e+00	1.0000	437.0	3.17%	533.5	4.09%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	1020.0	7.39%	1138.7	8.73%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-0.000e+00	1.0000	4728.0	34.25%	4769.4	36.59%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-0.000e+00	1.0000	1232.0	8.92%	1353.4	10.38%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-0.000e+00	1.0000	584.0	4.23%	689.8	5.29%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-0.000e+00	1.0000	1482.0	10.74%	1605.1	12.31%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-0.000e+00	1.0000	1050.0	7.61%	1170.7	8.98%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	1576.0	11.42%	1701.0	13.05%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-0.000e+00	1.0000	1019.0	7.38%	1139.4	8.74%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	5472.0	39.64%	5483.4	42.06%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-0.000e+00	1.0000	3388.0	24.54%	3481.7	26.71%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-0.000e+00	1.0000	2737.0	19.83%	2847.9	21.85%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-0.000e+00	1.0000	1931.0	13.99%	2054.3	15.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	4459.0	32.30%	4515.0	34.64%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-0.000e+00	1.0000	1597.0	11.57%	1722.5	13.21%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	2418.0	17.52%	2535.5	19.45%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-0.000e+00	1.0000	3028.0	21.93%	3132.1	24.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	2013.0	14.58%	2136.9	16.39%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-0.000e+00	1.0000	1005.0	7.28%	1126.3	8.64%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	4268.0	30.92%	4333.4	33.24%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-0.000e+00	1.0000	2261.0	16.38%	2382.1	18.27%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-0.000e+00	1.0000	904.0	6.55%	1024.1	7.86%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-0.000e+00	1.0000	614.0	4.45%	724.4	5.56%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-0.000e+00	1.0000	3758.0	27.22%	3844.6	29.49%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-0.000e+00	1.0000	241.0	1.75%	324.7	2.49%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-0.000e+00	1.0000	1332.0	9.65%	1460.9	11.21%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-0.000e+00	1.0000	1650.0	11.95%	1779.5	13.65%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	8848.0	64.09%	8667.0	66.49%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-0.000e+00	1.0000	1623.0	11.76%	1754.9	13.46%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-0.000e+00	1.0000	1986.0	14.39%	2116.1	16.23%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-0.000e+00	1.0000	2992.0	21.67%	3105.4	23.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-0.000e+00	1.0000	1350.0	9.78%	1481.2	11.36%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-0.000e+00	1.0000	4347.0	31.49%	4418.1	33.89%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	1965.0	14.23%	2097.7	16.09%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-0.000e+00	1.0000	1207.0	8.74%	1339.0	10.27%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-0.000e+00	1.0000	1204.0	8.72%	1336.1	10.25%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-0.000e+00	1.0000	2251.0	16.31%	2382.7	18.28%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	1959.0	14.19%	2093.4	16.06%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	1112.0	8.06%	1243.2	9.54%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	6633.0	48.05%	6600.3	50.63%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-0.000e+00	1.0000	672.0	4.87%	790.9	6.07%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-0.000e+00	1.0000	1442.0	10.45%	1577.2	12.10%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-0.000e+00	1.0000	439.0	3.18%	544.7	4.18%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-0.000e+00	1.0000	1038.0	7.52%	1169.4	8.97%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	1714.0	12.42%	1852.0	14.21%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-0.000e+00	1.0000	3356.0	24.31%	3466.5	26.59%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-0.000e+00	1.0000	1061.0	7.69%	1193.7	9.16%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-0.000e+00	1.0000	1107.0	8.02%	1240.5	9.52%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-0.000e+00	1.0000	4528.0	32.80%	4599.9	35.29%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-0.000e+00	1.0000	1726.0	12.50%	1864.1	14.30%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-0.000e+00	1.0000	920.0	6.66%	1049.6	8.05%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-0.000e+00	1.0000	3129.0	22.67%	3247.1	24.91%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-0.000e+00	1.0000	2047.0	14.83%	2184.4	16.76%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-0.000e+00	1.0000	598.0	4.33%	715.6	5.49%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-0.000e+00	1.0000	3161.0	22.90%	3279.3	25.16%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-0.000e+00	1.0000	3486.0	25.25%	3596.9	27.59%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-0.000e+00	1.0000	866.0	6.27%	996.3	7.64%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	58.0	0.42%	112.6	0.86%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-0.000e+00	1.0000	423.0	3.06%	531.8	4.08%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-0.000e+00	1.0000	3050.0	22.09%	3178.0	24.38%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-0.000e+00	1.0000	1961.0	14.20%	2105.1	16.15%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	6493.0	47.03%	6481.5	49.72%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-0.000e+00	1.0000	1762.0	12.76%	1907.9	14.64%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	3953.0	28.63%	4055.1	31.11%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-0.000e+00	1.0000	3866.0	28.00%	3972.1	30.47%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	5657.0	40.98%	5690.5	43.65%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-0.000e+00	1.0000	933.0	6.76%	1069.6	8.21%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-0.000e+00	1.0000	226.0	1.64%	316.7	2.43%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-0.000e+00	1.0000	594.0	4.30%	717.3	5.50%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-0.000e+00	1.0000	6113.0	44.28%	6130.8	47.03%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-0.000e+00	1.0000	4090.0	29.63%	4196.4	32.19%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-0.000e+00	1.0000	1356.0	9.82%	1506.2	11.55%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	2700.0	19.56%	2844.9	21.82%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-0.000e+00	1.0000	2778.0	20.12%	2921.7	22.41%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-0.000e+00	1.0000	1477.0	10.70%	1629.5	12.50%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-0.000e+00	1.0000	2368.0	17.15%	2518.3	19.32%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-0.000e+00	1.0000	4006.0	29.02%	4118.2	31.59%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-0.000e+00	1.0000	1561.0	11.31%	1716.4	13.17%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-0.000e+00	1.0000	1809.0	13.10%	1965.4	15.08%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	946.0	6.85%	1090.4	8.36%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-0.000e+00	1.0000	3643.0	26.39%	3769.2	28.91%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-0.000e+00	1.0000	1260.0	9.13%	1413.0	10.84%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-0.000e+00	1.0000	2705.0	19.59%	2854.9	21.90%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	5589.0	40.49%	5641.7	43.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	5953.0	43.12%	5988.2	45.94%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-0.000e+00	1.0000	1172.0	8.49%	1324.0	10.16%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-0.000e+00	1.0000	1335.0	9.67%	1490.4	11.43%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-0.000e+00	1.0000	2003.0	14.51%	2162.1	16.59%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-0.000e+00	1.0000	2548.0	18.46%	2702.1	20.73%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-0.000e+00	1.0000	1428.0	10.34%	1586.2	12.17%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-0.000e+00	1.0000	1148.0	8.32%	1304.0	10.00%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-0.000e+00	1.0000	2204.0	15.97%	2367.3	18.16%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	5494.0	39.80%	5560.5	42.66%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	686.0	4.97%	825.9	6.34%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	1974.0	14.30%	2139.7	16.41%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	1308.0	9.47%	1469.4	11.27%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	688.0	4.98%	828.9	6.36%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-0.000e+00	1.0000	5273.0	38.20%	5351.3	41.05%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-0.000e+00	1.0000	1044.0	7.56%	1199.3	9.20%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-0.000e+00	1.0000	1069.0	7.74%	1225.2	9.40%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-0.000e+00	1.0000	908.0	6.58%	1059.5	8.13%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-0.000e+00	1.0000	2275.0	16.48%	2441.1	18.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	1351.0	9.79%	1516.9	11.64%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-0.000e+00	1.0000	861.0	6.24%	1012.1	7.76%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-0.000e+00	1.0000	2683.0	19.43%	2847.3	21.84%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-0.000e+00	1.0000	4934.0	35.74%	5032.9	38.61%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	5645.0	40.89%	5714.5	43.84%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-0.000e+00	1.0000	5347.0	38.73%	5430.8	41.66%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-0.000e+00	1.0000	3457.0	25.04%	3610.3	27.70%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-0.000e+00	1.0000	1081.0	7.83%	1244.2	9.54%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-0.000e+00	1.0000	4267.0	30.91%	4397.1	33.73%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-0.000e+00	1.0000	4910.0	35.57%	5016.8	38.49%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-0.000e+00	1.0000	845.0	6.12%	1000.4	7.67%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	2161.0	15.65%	2338.4	17.94%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-0.000e+00	1.0000	1942.0	14.07%	2121.0	16.27%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-0.000e+00	1.0000	4503.0	32.62%	4631.9	35.53%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	3452.0	25.01%	3614.0	27.72%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	3150.0	22.82%	3319.3	25.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-0.000e+00	1.0000	1634.0	11.84%	1814.5	13.92%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	2916.0	21.12%	3090.7	23.71%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-0.000e+00	1.0000	1665.0	12.06%	1846.2	14.16%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-0.000e+00	1.0000	1331.0	9.64%	1507.7	11.57%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-0.000e+00	1.0000	1241.0	8.99%	1415.5	10.86%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	4063.0	29.43%	4210.9	32.30%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	4177.0	30.26%	4321.1	33.15%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-0.000e+00	1.0000	1351.0	9.79%	1529.0	11.73%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	2683.0	19.43%	2864.8	21.98%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-0.000e+00	1.0000	2440.0	17.67%	2624.0	20.13%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	3280.0	23.76%	3453.6	26.49%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-0.000e+00	1.0000	1030.0	7.46%	1204.2	9.24%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	2616.0	18.95%	2804.7	21.52%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1042.0	7.55%	1217.4	9.34%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-0.000e+00	1.0000	1577.0	11.42%	1766.2	13.55%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	7278.0	52.72%	7285.3	55.89%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	2472.0	17.91%	2664.1	20.44%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-0.000e+00	1.0000	1001.0	7.25%	1176.7	9.03%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-0.000e+00	1.0000	731.0	5.30%	893.1	6.85%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-0.000e+00	1.0000	4398.0	31.86%	4550.0	34.90%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	691.0	5.01%	852.2	6.54%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-0.000e+00	1.0000	4617.0	33.44%	4767.6	36.57%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	1635.0	11.84%	1834.6	14.07%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-0.000e+00	1.0000	2462.0	17.83%	2664.5	20.44%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-0.000e+00	1.0000	2625.0	19.01%	2829.8	21.71%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-0.000e+00	1.0000	1829.0	13.25%	2034.3	15.61%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-0.000e+00	1.0000	2071.0	15.00%	2280.3	17.49%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-0.000e+00	1.0000	2702.0	19.57%	2909.2	22.32%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	1702.0	12.33%	1909.1	14.65%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-0.000e+00	1.0000	1302.0	9.43%	1501.3	11.52%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-0.000e+00	1.0000	3406.0	24.67%	3603.9	27.65%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-0.000e+00	1.0000	2116.0	15.33%	2329.2	17.87%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	6827.0	49.45%	6887.3	52.83%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-0.000e+00	1.0000	3535.0	25.61%	3733.8	28.64%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-0.000e+00	1.0000	3847.0	27.87%	4040.7	31.00%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	3453.0	25.01%	3656.8	28.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-0.000e+00	1.0000	1265.0	9.16%	1468.5	11.27%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	3027.0	21.93%	3240.3	24.86%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-0.000e+00	1.0000	1898.0	13.75%	2116.0	16.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	4138.0	29.97%	4327.6	33.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-0.000e+00	1.0000	2396.0	17.36%	2618.5	20.09%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-0.000e+00	1.0000	1264.0	9.16%	1471.8	11.29%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-0.000e+00	1.0000	684.0	4.95%	862.1	6.61%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-0.000e+00	1.0000	1227.0	8.89%	1433.3	11.00%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	0.000e+00	1.0000	1813.0	13.13%	2057.7	15.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	4622.0	33.48%	4862.7	37.30%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	3955.0	28.65%	4199.1	32.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	0.000e+00	1.0000	3347.0	24.24%	3678.6	28.22%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	0.000e+00	1.0000	1445.0	10.47%	1734.1	13.30%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	0.000e+00	1.0000	4068.0	29.47%	4283.3	32.86%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	0.000e+00	1.0000	3771.0	27.32%	4088.6	31.36%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	0.000e+00	1.0000	4155.0	30.10%	4530.3	34.75%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	0.000e+00	1.0000	2899.0	21.00%	3244.0	24.89%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	0.000e+00	1.0000	3480.0	25.21%	3802.4	29.17%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	0.000e+00	1.0000	4012.0	29.06%	4290.3	32.91%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	0.000e+00	1.0000	3216.0	23.30%	3622.7	27.79%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	0.000e+00	1.0000	2022.0	14.65%	2362.0	18.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	2059.0	14.91%	2314.8	17.76%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	0.000e+00	1.0000	2387.0	17.29%	2873.5	22.04%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	799.0	5.79%	1031.8	7.92%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	1227.0	8.89%	1483.1	11.38%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	0.000e+00	1.0000	1148.0	8.32%	1366.6	10.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	3318.0	24.03%	3545.0	27.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	0.000e+00	1.0000	2202.0	15.95%	2582.7	19.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	2625.0	19.01%	2918.2	22.39%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	0.000e+00	1.0000	5262.0	38.12%	5439.7	41.73%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	0.000e+00	1.0000	2246.0	16.27%	2540.2	19.49%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	0.000e+00	1.0000	639.0	4.63%	836.0	6.41%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	0.000e+00	1.0000	2073.0	15.02%	2495.2	19.14%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	0.000e+00	1.0000	3322.0	24.06%	3793.4	29.10%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	0.000e+00	1.0000	2727.0	19.75%	3086.1	23.67%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	0.000e+00	1.0000	2289.0	16.58%	2573.3	19.74%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	0.000e+00	1.0000	3663.0	26.53%	3922.2	30.09%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	0.000e+00	1.0000	1625.0	11.77%	1905.9	14.62%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	0.000e+00	1.0000	946.0	6.85%	1162.2	8.92%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	0.000e+00	1.0000	2191.0	15.87%	2439.6	18.71%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.01%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	0.000e+00	1.0000	3951.0	28.62%	4178.5	32.05%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	1.2	0.01%