Left reads: Input : 49161139 Mapped : 41695623 (84.8% of input) of these: 3233556 ( 7.8%) have multiple alignments (22224 have >20) Right reads: Input : 49161139 Mapped : 41277393 (84.0% of input) of these: 3235701 ( 7.8%) have multiple alignments (22290 have >20) 84.4% overall read mapping rate. Aligned pairs: 39316984 of these: 3059399 ( 7.8%) have multiple alignments 355069 ( 0.9%) are discordant alignments 79.3% concordant pair alignment rate.