ASSEMBLY                = /home/ckern/FAANG_Project/Pig_Ensembl/Genome/Sscrofa10.2.fa
ANNOTATION              = /home/ckern/FAANG_Project/Pig_Ensembl/Genome/Sscrofa10.2.87.gtf
FRAGMENT_LENGTH = 200
BROAD_PEAKS_WITH_INPUT = H3K27me3 H3K4me1
NARROW_PEAKS_WITH_INPUT = H3K4me3 H3K27ac CTCF
H3K27me3_INPUT = Input
H3K4me3_INPUT = Input
H3K27ac_INPUT = Input2
H3K4me1_INPUT = Input2
CTCF_INPUT = InputCTCF
GENOME_SIZE = 2.81e9
MAPQ = 30