Left reads: Input : 54832154 Mapped : 45877371 (83.7% of input) of these: 2002034 ( 4.4%) have multiple alignments (25067 have >20) Right reads: Input : 54832154 Mapped : 45435495 (82.9% of input) of these: 1974090 ( 4.3%) have multiple alignments (25091 have >20) 83.3% overall read mapping rate. Aligned pairs: 43468700 of these: 1916847 ( 4.4%) have multiple alignments 172132 ( 0.4%) are discordant alignments 79.0% concordant pair alignment rate.