Left reads: Input : 38847375 Mapped : 32557698 (83.8% of input) of these: 2129195 ( 6.5%) have multiple alignments (8638 have >20) Right reads: Input : 38847375 Mapped : 32424223 (83.5% of input) of these: 2157374 ( 6.7%) have multiple alignments (8641 have >20) 83.6% overall read mapping rate. Aligned pairs: 31213235 of these: 2021727 ( 6.5%) have multiple alignments 236595 ( 0.8%) are discordant alignments 79.7% concordant pair alignment rate.