Left reads: Input : 42102958 Mapped : 34905468 (82.9% of input) of these: 1754827 ( 5.0%) have multiple alignments (9641 have >20) Right reads: Input : 42102958 Mapped : 34637209 (82.3% of input) of these: 1730814 ( 5.0%) have multiple alignments (9526 have >20) 82.6% overall read mapping rate. Aligned pairs: 33088984 of these: 1686863 ( 5.1%) have multiple alignments 201262 ( 0.6%) are discordant alignments 78.1% concordant pair alignment rate.