Sample	Filename	File type	Encoding	Total Sequences	Total Bases	Sequences flagged as poor quality	Sequence length	%GC	total_deduplicated_percentage	avg_sequence_length	median_sequence_length	basic_statistics	per_base_sequence_quality	per_sequence_quality_scores	per_base_sequence_content	per_sequence_gc_content	per_base_n_content	sequence_length_distribution	sequence_duplication_levels	overrepresented_sequences	adapter_content
high_error_high_variance_R1	high_error_high_variance_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.83466683881339	150.0	150	pass	fail	fail	pass	fail	pass	pass	pass	pass	pass
high_error_high_variance_R2	high_error_high_variance_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.85314269712056	150.0	150	pass	fail	fail	pass	fail	pass	pass	pass	pass	pass
high_variance_R1	high_variance_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.82211690808342	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
high_variance_R2	high_variance_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.8165478688464	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
low_variance_R1	low_variance_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	96.02557864945418	150.0	150	pass	pass	pass	pass	warn	pass	pass	pass	pass	pass
low_variance_R2	low_variance_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.97778126696781	150.0	150	pass	pass	pass	pass	warn	pass	pass	pass	pass	pass
medium_variance_R1	medium_variance_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	98.29407159087813	150.0	150	pass	warn	fail	pass	fail	pass	pass	pass	pass	pass
medium_variance_R2	medium_variance_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	98.25352395622797	150.0	150	pass	warn	fail	pass	fail	pass	pass	pass	pass	pass
only_high_error_zero_var_no_indels_R1	only_high_error_zero_var_no_indels_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.79343670801056	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_high_error_zero_var_no_indels_R2	only_high_error_zero_var_no_indels_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	99.79716210523111	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_high_variance_zero_error_no_indels_R1	only_high_variance_zero_error_no_indels_R1.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	98.12365492499445	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_high_variance_zero_error_no_indels_R2	only_high_variance_zero_error_no_indels_R2.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	98.14417483374314	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_low_error_zero_var_no_indels_R1	only_low_error_zero_var_no_indels_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	96.0017653161374	150.0	150	pass	pass	pass	pass	warn	pass	pass	pass	pass	pass
only_low_error_zero_var_no_indels_R2	only_low_error_zero_var_no_indels_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.89211710759552	150.0	150	pass	pass	pass	pass	warn	pass	pass	pass	pass	pass
only_low_variance_zero_error_no_indels_R1	only_low_variance_zero_error_no_indels_R1.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.71027388211284	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_low_variance_zero_error_no_indels_R2	only_low_variance_zero_error_no_indels_R2.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.67852788378515	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_medium_error_zero_var_no_indels_R1	only_medium_error_zero_var_no_indels_R1.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	97.77650500908864	150.0	150	pass	warn	fail	pass	warn	pass	pass	pass	pass	pass
only_medium_error_zero_var_no_indels_R2	only_medium_error_zero_var_no_indels_R2.fq.gz	Conventional base calls	Sanger / Illumina 1.9	241097527.0	36.1 Gbp	0.0	150.0	41.0	97.86331461871563	150.0	150	pass	warn	fail	pass	warn	pass	pass	pass	pass	pass
only_medium_variance_zero_error_no_indels_R1	only_medium_variance_zero_error_no_indels_R1.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	96.39298668721503	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
only_medium_variance_zero_error_no_indels_R2	only_medium_variance_zero_error_no_indels_R2.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	96.43724001258684	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
reference_clean_R1	reference_clean_R1.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.51797679599092	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass
reference_clean_R2	reference_clean_R2.fq.gz	Conventional base calls	Illumina 1.5	241097527.0	36.1 Gbp	0.0	150.0	41.0	95.57788496985205	150.0	150	pass	fail	fail	pass	warn	pass	pass	pass	pass	pass