Module Section Sample Name Source FastQC all_sections high_error_high_variance_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/high_error_high_variance/fastqc/high_error_high_variance_R1_fastqc.zip FastQC all_sections high_error_high_variance_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/high_error_high_variance/fastqc/high_error_high_variance_R2_fastqc.zip FastQC all_sections high_variance_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/high_variance/fastqc/high_variance_R1_fastqc.zip FastQC all_sections high_variance_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/high_variance/fastqc/high_variance_R2_fastqc.zip FastQC all_sections low_variance_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/low_variance/fastqc/low_variance_R1_fastqc.zip FastQC all_sections low_variance_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/low_variance/fastqc/low_variance_R2_fastqc.zip FastQC all_sections medium_variance_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/medium_variance/fastqc/medium_variance_R1_fastqc.zip FastQC all_sections medium_variance_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/medium_variance/fastqc/medium_variance_R2_fastqc.zip FastQC all_sections only_high_error_zero_var_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_high_error_zero_var_no_indels/fastqc/only_high_error_zero_var_no_indels_R1_fastqc.zip FastQC all_sections only_high_error_zero_var_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_high_error_zero_var_no_indels/fastqc/only_high_error_zero_var_no_indels_R2_fastqc.zip FastQC all_sections only_high_variance_zero_error_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_high_variance_zero_error_no_indels/fastqc/only_high_variance_zero_error_no_indels_R1_fastqc.zip FastQC all_sections only_high_variance_zero_error_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_high_variance_zero_error_no_indels/fastqc/only_high_variance_zero_error_no_indels_R2_fastqc.zip FastQC all_sections only_low_error_zero_var_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_low_error_zero_var_no_indels/fastqc/only_low_error_zero_var_no_indels_R1_fastqc.zip FastQC all_sections only_low_error_zero_var_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_low_error_zero_var_no_indels/fastqc/only_low_error_zero_var_no_indels_R2_fastqc.zip FastQC all_sections only_low_variance_zero_error_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_low_variance_zero_error_no_indels/fastqc/only_low_variance_zero_error_no_indels_R1_fastqc.zip FastQC all_sections only_low_variance_zero_error_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_low_variance_zero_error_no_indels/fastqc/only_low_variance_zero_error_no_indels_R2_fastqc.zip FastQC all_sections only_medium_error_zero_var_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_medium_error_zero_var_no_indels/fastqc/only_medium_error_zero_var_no_indels_R1_fastqc.zip FastQC all_sections only_medium_error_zero_var_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_medium_error_zero_var_no_indels/fastqc/only_medium_error_zero_var_no_indels_R2_fastqc.zip FastQC all_sections only_medium_variance_zero_error_no_indels_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_medium_variance_zero_error_no_indels/fastqc/only_medium_variance_zero_error_no_indels_R1_fastqc.zip FastQC all_sections only_medium_variance_zero_error_no_indels_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/only_medium_variance_zero_error_no_indels/fastqc/only_medium_variance_zero_error_no_indels_R2_fastqc.zip FastQC all_sections reference_clean_R1 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/reference_clean/fastqc/reference_clean_R1_fastqc.zip FastQC all_sections reference_clean_R2 /group/ctbrowngrp4/2024-mhussien-QC/kprobes_rs/wgsim_simulation/results/reference_clean/fastqc/reference_clean_R2_fastqc.zip