100850613 + 0 in total (QC-passed reads + QC-failed reads) 100778947 + 0 primary 0 + 0 secondary 71666 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 52698653 + 0 mapped (52.25% : N/A) 52626987 + 0 primary mapped (52.22% : N/A) 0 + 0 paired in sequencing 0 + 0 read1 0 + 0 read2 0 + 0 properly paired (N/A : N/A) 0 + 0 with itself and mate mapped 0 + 0 singletons (N/A : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)