247895766 + 0 in total (QC-passed reads + QC-failed reads) 247863605 + 0 primary 0 + 0 secondary 32161 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 59951126 + 0 mapped (24.18% : N/A) 59918965 + 0 primary mapped (24.17% : N/A) 0 + 0 paired in sequencing 0 + 0 read1 0 + 0 read2 0 + 0 properly paired (N/A : N/A) 0 + 0 with itself and mate mapped 0 + 0 singletons (N/A : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)