5815765 + 0 in total (QC-passed reads + QC-failed reads) 5805333 + 0 primary 0 + 0 secondary 10432 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 4498872 + 0 mapped (77.36% : N/A) 4488440 + 0 primary mapped (77.32% : N/A) 0 + 0 paired in sequencing 0 + 0 read1 0 + 0 read2 0 + 0 properly paired (N/A : N/A) 0 + 0 with itself and mate mapped 0 + 0 singletons (N/A : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)