Qualimap report: BAM QC

Input data and parameters

QualiMap command line

qualimap bamqc -bam results/0.5X_no_error_hi_variance/alignment/0.5X_no_error_hi_variance.sorted.bam -nw 400 -hm 3

Alignment

Command line:	bwa mem -t 32 ../data/GCF_000002285.3_CanFam3.1_genomic.fna.gz results/0.5X_no_error_hi_variance/0.5X_no_error_hi_variance_R1.fa results/0.5X_no_error_hi_variance/0.5X_no_error_hi_variance_R2.fa
Draw chromosome limits:	no
Analyze overlapping paired-end reads:	no
Program:	bwa (0.7.19-r1273)
Analysis date:	Wed Jul 30 17:38:35 PDT 2025
Size of a homopolymer:	3
Skip duplicate alignments:	no
Number of windows:	400
BAM file:	results/0.5X_no_error_hi_variance/alignment/0.5X_no_error_hi_variance.sorted.bam

Summary

Globals

Reference size	2,410,976,875
Number of reads	8,036,542
Mapped reads	8,036,541 / 100%
Unmapped reads	1 / 0%
Mapped paired reads	8,036,541 / 100%
Mapped reads, first in pair	4,018,271 / 50%
Mapped reads, second in pair	4,018,270 / 50%
Mapped reads, both in pair	8,036,540 / 100%
Mapped reads, singletons	1 / 0%
Secondary alignments	0
Supplementary alignments	61 / 0%
Read min/max/mean length	30 / 150 / 150
Duplicated reads (estimated)	15,048 / 0.19%
Duplication rate	0.19%
Clipped reads	381,353 / 4.75%

ACGT Content

Number/percentage of A's	349,965,610 / 29.18%
Number/percentage of C's	249,643,546 / 20.82%
Number/percentage of T's	349,963,794 / 29.18%
Number/percentage of G's	249,649,619 / 20.82%
Number/percentage of N's	1,956 / 0%
GC Percentage	41.63%

Coverage

Mean	0.499
Standard Deviation	0.7175

Mapping Quality

Mean Mapping Quality

31.18

Insert size

Mean	398.67
Standard Deviation	46,654.87
P25/Median/P75	316 / 350 / 383

Mismatches and indels

General error rate	3.45%
Mismatches	37,621,587
Insertions	2,734,846
Mapped reads with at least one insertion	29.1%
Deletions	2,740,906
Mapped reads with at least one deletion	29.09%
Homopolymer indels	28.23%

Chromosome stats

Name	Length	Mapped bases	Mean coverage	Standard deviation
NC_006583.3	122678785	61272536	0.4995	0.7164
NC_006584.3	85426708	42751391	0.5004	0.7179
NC_006585.3	91889043	45890719	0.4994	0.7179
NC_006586.3	88276631	44095654	0.4995	0.7172
NC_006587.3	88915250	44384099	0.4992	0.7159
NC_006588.3	77573801	38723213	0.4992	0.7166
NC_006589.3	80974532	40434136	0.4993	0.7171
NC_006590.3	74330416	37109892	0.4993	0.7174
NC_006591.3	61074082	30550576	0.5002	0.7182
NC_006592.3	69331447	34589785	0.4989	0.7171
NC_006593.3	74389097	37138320	0.4992	0.7158
NC_006594.3	72498081	36167173	0.4989	0.7156
NC_006595.3	63241923	31567035	0.4991	0.7172
NC_006596.3	60966679	30434507	0.4992	0.7167
NC_006597.3	64190966	32036775	0.4991	0.7161
NC_006598.3	59632846	29828402	0.5002	0.7181
NC_006599.3	64289059	32106569	0.4994	0.7168
NC_006600.3	55844845	27881107	0.4993	0.7168
NC_006601.3	53741614	26833427	0.4993	0.7167
NC_006602.3	58134056	28994319	0.4987	0.7162
NC_006603.3	50858623	25378766	0.499	0.7168
NC_006604.3	61439934	30656070	0.499	0.7151
NC_006605.3	52294480	26090516	0.4989	0.7158
NC_006606.3	47698779	23816113	0.4993	0.7161
NC_006607.3	51628933	25758243	0.4989	0.7177
NC_006608.3	38964690	19451200	0.4992	0.7173
NC_006609.3	45876710	22881444	0.4988	0.7158
NC_006610.3	41182112	20547702	0.4989	0.7169
NC_006611.3	41845238	20860262	0.4985	0.7167
NC_006612.3	40214260	20067743	0.499	0.7163
NC_006613.3	39895921	19894571	0.4987	0.7157
NC_006614.3	38810281	19363933	0.4989	0.717
NC_006615.3	31377067	15660469	0.4991	0.7155
NC_006616.3	42124431	21020237	0.499	0.7164
NC_006617.3	26524999	13229232	0.4987	0.7168
NC_006618.3	30810995	15374994	0.499	0.7152
NC_006619.3	30902991	15419308	0.499	0.7166
NC_006620.3	23914537	11938665	0.4992	0.7158
NC_006621.3	123869142	61822726	0.4991	0.7167
NW_003726127.1	2660953	1343108	0.5047	0.7298
NW_003726128.1	1881673	932828	0.4957	0.7291
NW_003726129.1	1415205	711075	0.5025	0.7386
NW_003726130.1	1067467	537161	0.5032	0.7536
NW_003726131.1	866315	430893	0.4974	0.7297
NW_003726132.1	881102	449344	0.51	0.7397
NW_003726133.1	822601	410397	0.4989	0.721
NW_003726134.1	741967	375944	0.5067	0.7303
NW_003726135.1	745551	377506	0.5063	0.764
NW_003726136.1	602611	299489	0.497	0.7195
NW_003726137.1	573630	287739	0.5016	0.7227
NW_003726138.1	666183	337010	0.5059	0.7618
NW_003726139.1	557017	280465	0.5035	0.7359
NW_003726140.1	510604	261861	0.5128	0.7233
NW_003726141.1	497093	243827	0.4905	0.7239
NW_003726142.1	492630	251255	0.51	0.734
NW_003726143.1	577062	286621	0.4967	0.7537
NW_003726144.1	561270	276935	0.4934	0.7458
NW_003726145.1	407330	203106	0.4986	0.7064
NW_003726146.1	405216	205564	0.5073	0.7018
NW_003726147.1	508668	253740	0.4988	0.7604
NW_003726148.1	540093	269753	0.4995	0.7868
NW_003726149.1	448434	225671	0.5032	0.7513
NW_003726150.1	377800	190484	0.5042	0.7222
NW_003726151.1	384880	191039	0.4964	0.7255
NW_003726152.1	367143	184431	0.5023	0.7219
NW_003726153.1	399987	198556	0.4964	0.7787
NW_003726154.1	376204	188296	0.5005	0.7417
NW_003726155.1	416178	205458	0.4937	0.7321
NW_003726156.1	365470	183214	0.5013	0.7442
NW_003726157.1	322752	164449	0.5095	0.7386
NW_003726158.1	320591	162259	0.5061	0.7165
NW_003726159.1	310270	155973	0.5027	0.7309
NW_003726160.1	433650	214208	0.494	0.7741
NW_003726161.1	273228	136631	0.5001	0.7275
NW_003726162.1	281659	139553	0.4955	0.7186
NW_003726163.1	320442	161472	0.5039	0.756
NW_003726164.1	265648	133317	0.5019	0.7236
NW_003726165.1	241365	120242	0.4982	0.7202
NW_003726166.1	234529	121592	0.5185	0.7459
NW_003726167.1	252720	132908	0.5259	0.7492
NW_003726168.1	254975	128345	0.5034	0.7353
NW_003726169.1	226053	109952	0.4864	0.7158
NW_003726170.1	223744	113405	0.5069	0.7054
NW_003726171.1	227140	117279	0.5163	0.7414
NW_003726172.1	219672	106718	0.4858	0.687
NW_003726173.1	214597	111446	0.5193	0.7434
NW_003726174.1	386314	192663	0.4987	0.8558
NW_003726175.1	204342	101565	0.497	0.714
NW_003726176.1	201724	101214	0.5017	0.7191
NW_003726177.1	216332	106612	0.4928	0.7497
NW_003726178.1	200877	99979	0.4977	0.7171
NW_003726179.1	310654	151675	0.4882	0.8091
NW_003726180.1	200932	99338	0.4944	0.7122
NW_003726181.1	201410	99101	0.492	0.736
NW_003726182.1	292533	139206	0.4759	0.7775
NW_003726183.1	192561	96173	0.4994	0.6995
NW_003726184.1	210134	111284	0.5296	0.7477
NW_003726185.1	197844	102087	0.516	0.7574
NW_003726186.1	196813	100618	0.5112	0.7451
NW_003726187.1	180359	90797	0.5034	0.7446
NW_003726188.1	210247	100092	0.4761	0.7258
NW_003726189.1	177735	89448	0.5033	0.7235
NW_003726190.1	172100	87389	0.5078	0.7476
NW_003726191.1	166866	84053	0.5037	0.7297
NW_003726192.1	164926	84358	0.5115	0.7191
NW_003726193.1	157598	77155	0.4896	0.7136
NW_003726194.1	143980	71813	0.4988	0.7255
NW_003726195.1	141074	71502	0.5068	0.7158
NW_003726196.1	139526	67942	0.4869	0.7005
NW_003726197.1	142260	74219	0.5217	0.722
NW_003726198.1	138160	71313	0.5162	0.7233
NW_003726199.1	142296	69978	0.4918	0.6938
NW_003726200.1	133119	66271	0.4978	0.7528
NW_003726201.1	129748	64325	0.4958	0.7171
NW_003726202.1	125962	67984	0.5397	0.7591
NW_003726203.1	127429	64027	0.5025	0.7137
NW_003726204.1	128261	65137	0.5078	0.7379
NW_003726205.1	131872	65540	0.497	0.7163
NW_003726206.1	133432	63751	0.4778	0.7481
NW_003726207.1	119670	61090	0.5105	0.6957
NW_003726208.1	144750	73654	0.5088	0.7879
NW_003726209.1	120779	60491	0.5008	0.7084
NW_003726210.1	115952	57010	0.4917	0.7055
NW_003726211.1	118237	56681	0.4794	0.7347
NW_003726212.1	111908	56268	0.5028	0.7169
NW_003726213.1	117332	58923	0.5022	0.7341
NW_003726214.1	111759	55669	0.4981	0.6889
NW_003726215.1	108801	52647	0.4839	0.6972
NW_003726216.1	112014	60949	0.5441	0.7737
NW_003726217.1	106428	52727	0.4954	0.705
NW_003726218.1	104912	53266	0.5077	0.7466
NW_003726219.1	104646	52960	0.5061	0.7697
NW_003726220.1	103248	52823	0.5116	0.7357
NW_003726221.1	129482	63807	0.4928	0.7408
NW_003726222.1	118473	58607	0.4947	0.7831
NW_003726223.1	99993	48761	0.4876	0.7004
NW_003726224.1	109585	57759	0.5271	0.7424
NW_003726225.1	124049	53957	0.435	0.7131
NW_003726226.1	99658	50538	0.5071	0.7264
NW_003726227.1	101741	51254	0.5038	0.745
NW_003726228.1	97365	50264	0.5162	0.7399
NW_003726229.1	94395	46830	0.4961	0.7314
NW_003726230.1	102992	53023	0.5148	0.7493
NW_003726231.1	95509	46986	0.492	0.7451
NW_003726232.1	92047	44539	0.4839	0.6949
NW_003726233.1	87753	44555	0.5077	0.6948
NW_003726234.1	96536	52399	0.5428	0.7937
NW_003726235.1	86544	44955	0.5194	0.7272
NW_003726236.1	85476	43435	0.5082	0.745
NW_003726237.1	110512	54734	0.4953	0.7976
NW_003726238.1	83291	41895	0.503	0.7339
NW_003726239.1	82459	42545	0.516	0.7367
NW_003726240.1	81605	41944	0.514	0.6951
NW_003726241.1	82380	41957	0.5093	0.7522
NW_003726242.1	102198	48217	0.4718	0.7631
NW_003726243.1	82108	40713	0.4958	0.7658
NW_003726244.1	87041	44317	0.5092	0.7526
NW_003726245.1	79722	41590	0.5217	0.702
NW_003726246.1	230124	112578	0.4892	1.0258
NW_003726247.1	78357	39541	0.5046	0.6527
NW_003726248.1	256406	125050	0.4877	1.0647
NW_003726249.1	78050	40415	0.5178	0.7303
NW_003726250.1	81930	41170	0.5025	0.7401
NW_003726251.1	77100	38340	0.4973	0.693
NW_003726252.1	77130	38635	0.5009	0.7147
NW_003726253.1	79078	39827	0.5036	0.7507
NW_003726254.1	90550	41675	0.4602	0.7577
NW_003726255.1	82767	40161	0.4852	0.7639
NW_003726256.1	89070	40716	0.4571	0.7174
NW_003726257.1	97802	48758	0.4985	0.7739
NW_003726258.1	79712	39828	0.4996	0.718
NW_003726259.1	79581	42457	0.5335	0.7493
NW_003726260.1	73720	37445	0.5079	0.7327
NW_003726261.1	97799	48089	0.4917	0.7873
NW_003726262.1	73171	36430	0.4979	0.7229
NW_003726263.1	104732	49566	0.4733	0.7653
NW_003726264.1	78935	35956	0.4555	0.7153
NW_003726265.1	72992	38938	0.5335	0.7456
NW_003726266.1	68721	35029	0.5097	0.7299
NW_003726267.1	73611	35440	0.4814	0.7164
NW_003726268.1	68272	34170	0.5005	0.7372
NW_003726269.1	79297	37972	0.4789	0.7367
NW_003726270.1	84443	38435	0.4552	0.727
NW_003726271.1	80679	40377	0.5005	0.7293
NW_003726272.1	68834	34133	0.4959	0.742
NW_003726273.1	67496	33509	0.4965	0.6902
NW_003726274.1	66523	33206	0.4992	0.7688
NW_003726275.1	67057	34095	0.5084	0.6829
NW_003726276.1	66195	35902	0.5424	0.7742
NW_003726277.1	87584	45385	0.5182	0.7809
NW_003726278.1	84679	41327	0.488	0.7598
NW_003726279.1	65840	32332	0.4911	0.708
NW_003726280.1	65696	33570	0.511	0.694
NW_003726281.1	66021	32644	0.4944	0.6999
NW_003726282.1	67300	34521	0.5129	0.692
NW_003726283.1	88153	36479	0.4138	0.7621
NW_003726284.1	92437	47142	0.51	0.7606
NW_003726285.1	70351	35586	0.5058	0.7429
NW_003726286.1	64646	32013	0.4952	0.7165
NW_003726287.1	69126	34435	0.4981	0.7583
NW_003726288.1	227674	100537	0.4416	1.0286
NW_003726289.1	64123	32044	0.4997	0.7299
NW_003726290.1	61944	31179	0.5033	0.7061
NW_003726291.1	62414	32017	0.513	0.7457
NW_003726292.1	61779	30834	0.4991	0.6974
NW_003726293.1	90840	41019	0.4516	0.7597
NW_003726294.1	61194	31451	0.514	0.7437
NW_003726295.1	63245	28377	0.4487	0.6619
NW_003726296.1	60975	33511	0.5496	0.8162
NW_003726297.1	88336	42182	0.4775	0.768
NW_003726298.1	62896	27825	0.4424	0.7249
NW_003726299.1	60346	30230	0.5009	0.6966
NW_003726300.1	70666	29945	0.4238	0.6601
NW_003726301.1	71007	36250	0.5105	0.7131
NW_003726302.1	59879	29980	0.5007	0.7351
NW_003726303.1	59817	30471	0.5094	0.7594
NW_003726304.1	66981	30838	0.4604	0.6821
NW_003726305.1	62805	30396	0.484	0.7127
NW_003726306.1	68857	35298	0.5126	0.7655
NW_003726307.1	58149	28478	0.4897	0.7576
NW_003726308.1	84024	40409	0.4809	0.8081
NW_003726309.1	58658	29288	0.4993	0.744
NW_003726310.1	65402	33029	0.505	0.7586
NW_003726311.1	56534	28697	0.5076	0.7042
NW_003726312.1	59023	26953	0.4567	0.6887
NW_003726313.1	89903	33810	0.3761	0.6962
NW_003726314.1	54477	36004	0.6609	0.8043
NW_003726315.1	54307	27845	0.5127	0.6882
NW_003726316.1	69310	32033	0.4622	0.759
NW_003726317.1	57210	28097	0.4911	0.7187
NW_003726318.1	57907	29057	0.5018	0.7049
NW_003726319.1	53093	27223	0.5127	0.7234
NW_003726320.1	67358	29612	0.4396	0.7125
NW_003726321.1	54660	29308	0.5362	0.7145
NW_003726322.1	52548	26952	0.5129	0.6725
NW_003726323.1	52637	25682	0.4879	0.7418
NW_003726324.1	51964	26982	0.5192	0.764
NW_003726325.1	51648	26939	0.5216	0.7718
NW_003726326.1	51582	25745	0.4991	0.6885
NW_003726327.1	52288	26988	0.5161	0.7128
NW_003726328.1	50462	27239	0.5398	0.7607
NW_003726329.1	50869	26107	0.5132	0.7656
NW_003726330.1	53506	29673	0.5546	0.7644
NW_003726331.1	50005	23924	0.4784	0.7056
NW_003726332.1	84691	33227	0.3923	0.7214
NW_003726333.1	63256	31740	0.5018	0.7728
NW_003726334.1	59752	29653	0.4963	0.7405
NW_003726335.1	68739	32682	0.4755	0.7303
NW_003726336.1	49027	24485	0.4994	0.7231
NW_003726337.1	49032	26095	0.5322	0.7766
NW_003726338.1	57792	28125	0.4867	0.7528
NW_003726339.1	74646	33455	0.4482	0.7376
NW_003726340.1	48411	24851	0.5133	0.7705
NW_003726341.1	48200	20354	0.4223	0.6622
NW_003726342.1	75626	35983	0.4758	0.8263
NW_003726343.1	48436	25119	0.5186	0.7242
NW_003726344.1	47485	24888	0.5241	0.7918
NW_003726345.1	52731	25732	0.488	0.7713
NW_003726346.1	52367	26660	0.5091	0.7193
NW_003726347.1	46689	23102	0.4948	0.7051
NW_003726348.1	53681	26373	0.4913	0.735
NW_003726349.1	73441	33199	0.452	0.8031
NW_003726350.1	57620	27858	0.4835	0.7336
NW_003726351.1	70154	31747	0.4525	0.7452
NW_003726352.1	67100	30196	0.45	0.7634
NW_003726353.1	48085	23909	0.4972	0.7311
NW_003726354.1	63970	31139	0.4868	0.7652
NW_003726355.1	45242	22173	0.4901	0.6935
NW_003726356.1	58859	25973	0.4413	0.7102
NW_003726357.1	45065	19489	0.4325	0.6982
NW_003726358.1	46098	23074	0.5005	0.7116
NW_003726359.1	70370	31273	0.4444	0.804
NW_003726360.1	46044	22734	0.4937	0.6922
NW_003726361.1	45518	23340	0.5128	0.7085
NW_003726362.1	47960	25155	0.5245	0.7556
NW_003726363.1	44571	22476	0.5043	0.6845
NW_003726364.1	84617	38040	0.4496	0.8533
NW_003726365.1	51679	25390	0.4913	0.725
NW_003726366.1	48264	26694	0.5531	0.7703
NW_003726367.1	50939	25451	0.4996	0.753
NW_003726368.1	72756	30557	0.42	0.7338
NW_003726369.1	44216	22123	0.5003	0.7633
NW_003726370.1	43704	21868	0.5004	0.7483
NW_003726371.1	55991	27243	0.4866	0.7727
NW_003726372.1	54329	24544	0.4518	0.7038
NW_003726373.1	44549	21830	0.49	0.6679
NW_003726374.1	44306	24584	0.5549	0.8149
NW_003726375.1	60428	26344	0.436	0.7424
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NW_003726485.1	52768	23057	0.437	0.7833
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NW_003726487.1	31015	15235	0.4912	0.6816
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NW_003726499.1	30486	15308	0.5021	0.6622
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NW_003726507.1	36826	15587	0.4233	0.6746
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NW_003726519.1	29710	16441	0.5534	0.7184
NW_003726520.1	29345	14655	0.4994	0.6765
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NW_003726530.1	32931	17078	0.5186	0.738
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NW_003726688.1	27199	11053	0.4064	0.6598
NW_003726689.1	32829	15292	0.4658	0.7389
NW_003726690.1	32820	13479	0.4107	0.6601
NW_003726691.1	22972	10752	0.468	0.7357
NW_003726692.1	31011	15549	0.5014	0.837
NW_003726693.1	22693	10409	0.4587	0.6889
NW_003726694.1	22671	11687	0.5155	0.7233
NW_003726695.1	22655	11951	0.5275	0.7251
NW_003726696.1	23374	11664	0.499	0.7524
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NW_003726699.1	48551	17360	0.3576	0.692
NW_003726700.1	23951	12307	0.5138	0.7431
NW_003726701.1	22493	10147	0.4511	0.7003
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NW_003727361.1	11739	7179	0.6116	0.7593
NW_003727362.1	11738	5660	0.4822	0.6859
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NW_003727364.1	11732	5998	0.5113	0.768
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NW_003727401.1	45050	18855	0.4185	1.0002
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NW_003727429.1	11448	5692	0.4972	0.6436
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NW_003727445.1	12508	4510	0.3606	0.621
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NW_003727455.1	11061	5973	0.54	0.6628
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NW_003727460.1	11021	5078	0.4608	0.6533
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NW_003727462.1	11012	5927	0.5382	0.7094
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NW_003727464.1	11030	6566	0.5953	0.794
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NW_003727469.1	26441	9889	0.374	0.7807
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NW_003727484.1	14602	7191	0.4925	0.7647
NW_003727485.1	10822	5379	0.497	0.6138
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NW_003727490.1	13507	8102	0.5998	0.7462
NW_003727491.1	10780	5332	0.4946	0.707
NW_003727492.1	11232	6868	0.6115	0.924
NW_003727493.1	10772	7181	0.6666	0.7996
NW_003727494.1	10765	5677	0.5274	0.7723
NW_003727495.1	10755	5379	0.5001	0.666
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NW_003727504.1	10683	5094	0.4768	0.6745
NW_003727505.1	12565	5086	0.4048	0.5848
NW_003727506.1	10672	4119	0.386	0.6488
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NW_003727511.1	10645	6285	0.5904	0.857
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NW_003727513.1	10610	5993	0.5648	0.7037
NW_003727514.1	10609	4471	0.4214	0.6333
NW_003727515.1	18318	9243	0.5046	0.8073
NW_003727516.1	10582	5102	0.4821	0.7209
NW_003727517.1	17463	7197	0.4121	0.7468
NW_003727518.1	10562	5526	0.5232	0.6924
NW_003727519.1	10540	5972	0.5666	0.8178
NW_003727520.1	14326	7500	0.5235	0.7592
NW_003727521.1	10538	5398	0.5122	0.6914
NW_003727522.1	10537	5688	0.5398	0.7057
NW_003727523.1	11719	6869	0.5861	0.806
NW_003727524.1	10536	4494	0.4265	0.687
NW_003727525.1	10534	6273	0.5955	0.7691
NW_003727526.1	10532	4475	0.4249	0.6615
NW_003727527.1	10525	5681	0.5398	0.6254
NW_003727528.1	10517	6563	0.624	0.8985
NW_003727529.1	10513	5089	0.4841	0.7995
NW_003727530.1	15970	8685	0.5438	0.7808
NW_003727531.1	10510	6429	0.6117	0.7389
NW_003727532.1	10505	5056	0.4813	0.7027
NW_003727533.1	10500	4499	0.4285	0.6881
NW_003727534.1	17899	7640	0.4268	0.7964
NW_003727535.1	10479	4754	0.4537	0.6923
NW_003727536.1	18578	7185	0.3867	0.7523
NW_003727537.1	10456	6871	0.6571	0.7332
NW_003727538.1	10454	5385	0.5151	0.7135
NW_003727539.1	10438	5082	0.4869	0.791
NW_003727540.1	13604	6903	0.5074	0.8308
NW_003727541.1	10431	5707	0.5471	0.8303
NW_003727542.1	10418	5393	0.5177	0.7997
NW_003727543.1	10417	5545	0.5323	0.6994
NW_003727544.1	10415	5673	0.5447	0.725
NW_003727545.1	16700	5981	0.3581	0.7138
NW_003727546.1	10403	4478	0.4305	0.6782
NW_003727547.1	10399	5680	0.5462	0.8424
NW_003727548.1	10394	4187	0.4028	0.6498
NW_003727549.1	10393	4785	0.4604	0.6539
NW_003727550.1	13306	5700	0.4284	0.8235
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NW_003727557.1	12446	5997	0.4818	0.6689
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NW_003727565.1	10311	3424	0.3321	0.5263
NW_003727566.1	12461	5089	0.4084	0.7114
NW_003727567.1	10309	4153	0.4029	0.7059
NW_003727568.1	10302	4904	0.476	0.6633
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NW_003727570.1	10300	5395	0.5238	0.7111
NW_003727571.1	10300	5378	0.5221	0.7707
NW_003727572.1	10592	2993	0.2826	0.5265
NW_003727573.1	10277	5402	0.5256	0.7143
NW_003727574.1	10275	6887	0.6703	0.8917
NW_003727575.1	10274	7617	0.7414	0.7227
NW_003727576.1	10265	7457	0.7264	0.9042
NW_003727577.1	10263	4790	0.4667	0.714
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NW_003727580.1	10212	4483	0.439	0.7198
NW_003727581.1	10211	4781	0.4682	0.6573
NW_003727582.1	11833	6003	0.5073	0.7945
NW_003727583.1	10204	5064	0.4963	0.7778
NW_003727584.1	10200	5691	0.5579	1.0042
NW_003727585.1	10199	4514	0.4426	0.6431
NW_003727586.1	16329	7765	0.4755	0.7793
NW_003727587.1	10193	5662	0.5555	0.8155
NW_003727588.1	10183	4779	0.4693	0.6838
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NW_003727592.1	10178	5075	0.4986	0.6957
NW_003727593.1	10168	5799	0.5703	0.6736
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NW_003727601.1	13354	6554	0.4908	0.7645
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NW_003727608.1	10748	5078	0.4725	0.5946
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NW_003727610.1	10113	3576	0.3536	0.646
NW_003727611.1	13874	6590	0.475	0.7587
NW_003727612.1	10090	5089	0.5044	0.63
NW_003727613.1	10084	4160	0.4125	0.6278
NW_003727614.1	12938	4776	0.3691	0.6266
NW_003727615.1	10079	7176	0.712	1.0034
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NW_003727617.1	10065	4798	0.4767	0.7137
NW_003727618.1	10093	4195	0.4156	0.6184
NW_003727619.1	10058	3898	0.3876	0.5487
NW_003727620.1	10948	6004	0.5484	0.7639
NW_003727621.1	10484	4801	0.4579	0.6864
NW_003727622.1	10024	4772	0.4761	0.6205
NW_003727623.1	10023	5106	0.5094	0.6694
NW_003727624.1	10023	7173	0.7157	0.9642
NW_003727625.1	10006	5510	0.5507	0.7306
NW_003727626.1	10005	4143	0.4141	0.5532
NW_003727627.1	10004	5360	0.5358	0.7825
NW_003727628.1	10000	4774	0.4774	0.7404
NW_003727629.1	11521	3898	0.3383	0.5771
NW_003727630.1	11079	5841	0.5272	0.7753
NW_003727631.1	9970	4792	0.4806	0.6809
NW_003727632.1	10143	6291	0.6202	0.8397
NW_003727633.1	9937	5402	0.5436	0.7705
NW_003727634.1	15551	6295	0.4048	0.6494
NW_003727635.1	9923	5651	0.5695	0.7548
NW_003727636.1	9921	5662	0.5707	0.8414
NW_003727637.1	9919	3892	0.3924	0.6218
NW_003727638.1	9914	5068	0.5112	0.7284
NW_003727639.1	9913	5097	0.5142	0.6667
NW_003727640.1	9908	5701	0.5754	0.9152
NW_003727641.1	9908	3888	0.3924	0.5326
NW_003727642.1	9902	6127	0.6188	0.8218
NW_003727643.1	9859	5098	0.5171	0.6978
NW_003727644.1	16733	7478	0.4469	0.8474
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NW_003727646.1	9843	5103	0.5184	0.6233
NW_003727647.1	12747	5706	0.4476	0.7187
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NW_003727650.1	9811	5690	0.58	0.6871
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NW_003727652.1	9809	4727	0.4819	0.5989
NW_003727653.1	9800	4774	0.4871	0.6797
NW_003727654.1	9788	5970	0.6099	0.6929
NW_003727655.1	9786	4851	0.4957	0.6693
NW_003727656.1	9770	4203	0.4302	0.5889
NW_003727657.1	9746	6284	0.6448	0.9167
NW_003727658.1	9722	4795	0.4932	0.6934
NW_003727659.1	9731	5699	0.5857	0.7387
NW_003727660.1	17219	7465	0.4335	0.7891
NW_003727661.1	9705	5814	0.5991	0.7546
NW_003727662.1	9695	6130	0.6323	0.8186
NW_003727663.1	9690	3897	0.4022	0.6081
NW_003727664.1	15054	6872	0.4565	0.7668
NW_003727665.1	9679	4813	0.4973	0.762
NW_003727666.1	9667	5259	0.544	0.7057
NW_003727667.1	9657	4802	0.4973	0.7362
NW_003727668.1	9648	5359	0.5555	0.7159
NW_003727669.1	9646	3294	0.3415	0.5483
NW_003727670.1	27321	9564	0.3501	0.824
NW_003727671.1	9626	3894	0.4045	0.6488
NW_003727672.1	15306	6007	0.3925	0.7057
NW_003727673.1	9620	4180	0.4345	0.685
NW_003727674.1	10330	4805	0.4652	0.6427
NW_003727675.1	9601	3887	0.4049	0.65
NW_003727676.1	9597	3902	0.4066	0.6141
NW_003727677.1	9587	5354	0.5585	0.7511
NW_003727678.1	9580	4784	0.4994	0.6727
NW_003727679.1	9572	5385	0.5626	0.7065
NW_003727680.1	9571	6284	0.6566	0.8261
NW_003727681.1	9560	4770	0.499	0.657
NW_003727682.1	10339	5101	0.4934	0.7766
NW_003727683.1	11843	5978	0.5048	0.8734
NW_003727684.1	9548	5689	0.5958	0.6477
NW_003727685.1	9546	5087	0.5329	0.7956
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NW_003727688.1	9522	5239	0.5502	0.7677
NW_003727689.1	9520	4746	0.4985	0.7061
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NW_003727691.1	9499	3883	0.4088	0.6414
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NW_003727707.1	15866	8055	0.5077	0.925
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NW_003727712.1	9413	4781	0.5079	0.7971
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NW_003727714.1	9401	4353	0.463	0.6397
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NW_003727785.1	15377	5994	0.3898	0.652
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NW_003727788.1	9043	4043	0.4471	0.6873
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NW_003727811.1	10513	3908	0.3717	0.6668
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NW_003727819.1	8921	3892	0.4363	0.7458
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NW_003727822.1	8911	3741	0.4198	0.5604
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NW_003727824.1	8893	6898	0.7757	1.0059
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NW_003727976.1	9779	5088	0.5203	0.6944
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NW_003727979.1	8655	4177	0.4826	0.7054
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NW_003727988.1	8920	3607	0.4044	0.5421
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NW_003727991.1	8166	3005	0.368	0.6296
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NW_003728003.1	8130	4802	0.5907	0.8078
NW_003728004.1	8120	4483	0.5521	0.6902
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NW_003728009.1	8099	5050	0.6235	0.7441
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NW_003728011.1	8090	4195	0.5185	0.6821
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NW_003728424.1	6823	2978	0.4365	0.7112
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NW_003728429.1	6812	3592	0.5273	0.7612
NW_003728430.1	6812	3901	0.5727	0.7406
NW_003728431.1	6812	3297	0.484	0.7014
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NW_003728434.1	6804	3872	0.5691	0.7466
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NW_003728634.1	6241	2099	0.3363	0.5583
NW_003728635.1	6238	2696	0.4322	0.8329
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NW_003728637.1	6233	2383	0.3823	0.6463
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NW_003728656.1	6194	1797	0.2901	0.4806
NW_003728657.1	6192	2698	0.4357	0.6011
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NW_003728660.1	6185	4181	0.676	0.919
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NW_003728662.1	6184	2973	0.4808	0.6629
NW_003728663.1	6181	2534	0.41	0.6168
NW_003728664.1	8707	3890	0.4468	0.858
NW_003728665.1	6179	3865	0.6255	0.7279
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NW_003728667.1	6177	3589	0.581	0.8536
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NW_003728669.1	6173	3571	0.5785	0.827
NW_003728670.1	9546	4777	0.5004	0.7924
NW_003728671.1	6169	3829	0.6207	0.9135
NW_003728672.1	6163	3577	0.5804	0.705
NW_003728673.1	6160	2994	0.486	0.6114
NW_003728674.1	6159	2700	0.4384	0.7423
NW_003728675.1	6153	3587	0.583	1.1012
NW_003728676.1	6150	2990	0.4862	0.6384
NW_003728677.1	6150	2966	0.4823	0.7097
NW_003728678.1	6146	4762	0.7748	0.9852
NW_003728679.1	6145	3404	0.5539	0.6496
NW_003728680.1	6145	3605	0.5867	0.8568
NW_003728681.1	6145	2704	0.44	0.6548
NW_003728682.1	6144	3002	0.4886	0.8982
NW_003728683.1	6142	2097	0.3414	0.5383
NW_003728684.1	6141	2704	0.4403	0.6577
NW_003728685.1	6138	2773	0.4518	0.6758
NW_003728686.1	8199	3868	0.4718	0.7068
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NW_003728688.1	6131	2079	0.3391	0.5189
NW_003728689.1	6131	3300	0.5382	0.6582
NW_003728690.1	6130	3862	0.63	0.7474
NW_003728691.1	6130	1796	0.293	0.4812
NW_003728692.1	6126	2995	0.4889	0.5454
NW_003728693.1	6125	3002	0.4901	0.7083
NW_003728694.1	6120	3284	0.5366	0.7122
NW_003728695.1	6119	3003	0.4908	0.6816
NW_003728696.1	6117	2687	0.4393	0.879
NW_003728697.1	6117	2669	0.4363	0.6318
NW_003728698.1	8904	3913	0.4395	0.7927
NW_003728699.1	6098	2706	0.4438	0.6741
NW_003728700.1	6096	4162	0.6827	0.8345
NW_003728701.1	6096	3289	0.5395	0.7518
NW_003728702.1	6085	2988	0.491	0.6532
NW_003728703.1	6084	1810	0.2975	0.4686
NW_003728704.1	6079	3295	0.542	0.8414
NW_003728705.1	6063	3886	0.6409	0.8861
NW_003728706.1	6063	2393	0.3947	0.7106
NW_003728707.1	6061	3299	0.5443	0.7899
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NW_003728709.1	6054	2095	0.3461	0.6192
NW_003728710.1	6053	1791	0.2959	0.6125
NW_003728711.1	6050	3895	0.6438	0.9432
NW_003728712.1	6047	3269	0.5406	0.7825
NW_003728713.1	6046	2676	0.4426	0.6752
NW_003728714.1	6045	2698	0.4463	0.6059
NW_003728715.1	6045	2998	0.4959	0.5873
NW_003728716.1	6043	2395	0.3963	0.6477
NW_003728717.1	6040	1797	0.2975	0.5036
NW_003728718.1	6038	3000	0.4969	0.8938
NW_003728719.1	6037	2681	0.4441	0.6313
NW_003728720.1	6035	2395	0.3969	0.5535
NW_003728721.1	6035	2394	0.3967	0.5574
NW_003728722.1	6035	2685	0.4449	0.7342
NW_003728723.1	6027	3103	0.5148	0.631
NW_003728724.1	6023	2711	0.4501	0.621
NW_003728725.1	6019	2655	0.4411	0.6761
NW_003728726.1	6012	3294	0.5479	0.832
NW_003728727.1	6011	2395	0.3984	0.6319
NW_003728728.1	6007	2103	0.3501	0.5911
NW_003728729.1	6006	2696	0.4489	0.553
NW_003728730.1	6005	3281	0.5464	0.6472
NW_003728731.1	6002	3605	0.6006	0.6572
NW_003728732.1	6000	2984	0.4973	0.7236
NW_003728733.1	6000	3890	0.6483	0.6724
NW_003728734.1	5991	2106	0.3515	0.551
NW_003728735.1	5990	3604	0.6017	0.766
NW_003728736.1	5990	2673	0.4462	0.6393
NW_003728737.1	5984	2978	0.4977	0.6259
NW_003728738.1	5983	2085	0.3485	0.5574
NW_003728739.1	5982	4162	0.6958	0.8469
NW_003728740.1	5982	3584	0.5991	0.6865
NW_003728741.1	5974	2405	0.4026	0.6944
NW_003728742.1	5973	3876	0.6489	0.8267
NW_003728743.1	5964	2676	0.4487	0.6484
NW_003728744.1	5960	2700	0.453	0.6595
NW_003728745.1	5957	2669	0.448	0.6628
NW_003728746.1	5952	3596	0.6042	0.8164
NW_003728747.1	5950	3583	0.6022	0.8345
NW_003728748.1	5949	3884	0.6529	0.7081
NW_003728749.1	5947	1800	0.3027	0.5678
NW_003728750.1	5944	3266	0.5495	0.6916
NW_003728751.1	5943	3291	0.5538	0.7584
NW_003728752.1	5941	3288	0.5534	0.8163
NW_003728753.1	5937	3130	0.5272	0.8403
NW_003728754.1	5937	2067	0.3482	0.605
NW_003728755.1	5926	3079	0.5196	0.6411
NW_003728756.1	5924	2678	0.4521	0.7246
NW_003728757.1	5921	2989	0.5048	0.7255
NW_003728758.1	5917	2994	0.506	0.6694
NW_003728759.1	5916	2383	0.4028	0.6548
NW_003728760.1	5915	2381	0.4025	0.5506
NW_003728761.1	5910	3312	0.5604	0.8689
NW_003728762.1	5907	2988	0.5058	0.6574
NW_003728763.1	5896	2704	0.4586	0.6756
NW_003728764.1	5895	3861	0.655	0.7906
NW_003728765.1	5894	2683	0.4552	0.5854
NW_003728766.1	5888	2681	0.4553	0.6786
NW_003728767.1	5887	2992	0.5082	0.7145
NW_003728768.1	5885	2995	0.5089	0.6196
NW_003728769.1	5883	2702	0.4593	0.7203
NW_003728770.1	5880	3287	0.559	0.6373
NW_003728771.1	5878	3291	0.5599	0.6839
NW_003728772.1	5875	3271	0.5568	0.6534
NW_003728773.1	5874	2992	0.5094	0.7628
NW_003728774.1	5867	2991	0.5098	0.6006
NW_003728775.1	5861	1793	0.3059	0.7009
NW_003728776.1	5857	3001	0.5124	0.6746
NW_003728777.1	5856	1792	0.306	0.5124
NW_003728778.1	5856	3270	0.5584	0.7341
NW_003728779.1	5854	2098	0.3584	0.6219
NW_003728780.1	5853	2093	0.3576	0.6947
NW_003728781.1	5852	2691	0.4598	0.7129
NW_003728782.1	5852	3464	0.5919	0.804
NW_003728783.1	5842	2699	0.462	0.7326
NW_003728784.1	5841	3590	0.6146	0.8947
NW_003728785.1	5840	2240	0.3836	0.6284
NW_003728786.1	5833	4204	0.7207	0.7812
NW_003728787.1	5818	2992	0.5143	0.9684
NW_003728788.1	5817	3594	0.6178	0.7701
NW_003728789.1	5817	2979	0.5121	0.7354
NW_003728790.1	5815	3274	0.563	0.8384
NW_003728791.1	5814	4195	0.7215	0.7477
NW_003728792.1	5813	3283	0.5648	0.8667
NW_003728793.1	5809	2691	0.4632	0.6473
NW_003728794.1	5808	3587	0.6176	0.6735
NW_003728795.1	10965	4795	0.4373	0.7775
NW_003728796.1	5806	3303	0.5689	0.5991
NW_003728797.1	5804	2398	0.4132	0.6298
NW_003728798.1	5804	3291	0.567	0.6941
NW_003728799.1	5804	2997	0.5164	0.6246
NW_003728800.1	5797	2700	0.4658	0.6867
NW_003728801.1	5796	3307	0.5706	0.7636
NW_003728802.1	5793	2999	0.5177	0.6147
NW_003728803.1	5783	2982	0.5156	0.669
NW_003728804.1	5779	2971	0.5141	0.6893
NW_003728805.1	5779	2701	0.4674	0.7686
NW_003728806.1	5779	2691	0.4657	0.7195
NW_003728807.1	5775	2974	0.515	0.7743
NW_003728808.1	5773	3295	0.5708	0.7015
NW_003728809.1	5768	3892	0.6748	0.8655
NW_003728810.1	7569	3294	0.4352	0.7952
NW_003728811.1	5753	3289	0.5717	0.7338
NW_003728812.1	5750	2683	0.4666	0.7212
NW_003728813.1	5748	3299	0.5739	0.7346
NW_003728814.1	5747	2979	0.5184	0.7198
NW_003728815.1	5735	2403	0.419	0.6612
NW_003728816.1	5733	2105	0.3672	0.5634
NW_003728817.1	5731	2998	0.5231	0.723
NW_003728818.1	5723	3000	0.5242	0.7228
NW_003728819.1	5721	2406	0.4206	0.609
NW_003728820.1	5716	3608	0.6312	0.8608
NW_003728821.1	5712	3297	0.5772	0.8066
NW_003728822.1	5711	2389	0.4183	0.5796
NW_003728823.1	10817	4190	0.3874	0.7426
NW_003728824.1	5710	2994	0.5243	0.7115
NW_003728825.1	5705	2705	0.4741	0.4992
NW_003728826.1	5703	2992	0.5246	0.9003
NW_003728827.1	5699	2696	0.4731	0.6394
NW_003728828.1	5695	2688	0.472	0.7705
NW_003728829.1	5694	2699	0.474	0.6232
NW_003728830.1	5693	2928	0.5143	0.7108
NW_003728831.1	5688	2983	0.5244	0.7346
NW_003728832.1	5685	1804	0.3173	0.5076
NW_003728833.1	11697	5394	0.4611	0.9687
NW_003728834.1	5684	3290	0.5788	0.8763
NW_003728835.1	5681	2836	0.4992	0.6492
NW_003728836.1	5680	2092	0.3683	0.6073
NW_003728837.1	5678	2682	0.4723	0.683
NW_003728838.1	5677	2088	0.3678	0.6014
NW_003728839.1	5675	1793	0.3159	0.6612
NW_003728840.1	5674	2988	0.5266	0.6527
NW_003728841.1	5674	1791	0.3157	0.5625
NW_003728842.1	5673	2389	0.4211	0.6694
NW_003728843.1	5671	3886	0.6852	0.7853
NW_003728844.1	5667	1495	0.2638	0.4754
NW_003728845.1	5665	2092	0.3693	0.5545
NW_003728846.1	5657	2385	0.4216	0.5988
NW_003728847.1	5656	2398	0.424	0.7791
NW_003728848.1	5654	4480	0.7924	0.7378
NW_003728849.1	5652	3282	0.5807	0.887
NW_003728850.1	5650	3000	0.531	0.7455
NW_003728851.1	5649	2706	0.479	0.6963
NW_003728852.1	5648	1804	0.3194	0.5184
NW_003728853.1	5638	2695	0.478	0.6207
NW_003728854.1	5635	2690	0.4774	0.7216
NW_003728855.1	5635	2079	0.3689	0.5706
NW_003728856.1	5630	2389	0.4243	0.6881
NW_003728857.1	5629	2691	0.4781	0.6354
NW_003728858.1	5629	2987	0.5306	0.5786
NW_003728859.1	5627	3293	0.5852	0.7942
NW_003728860.1	5624	3295	0.5859	0.8012
NW_003728861.1	5623	2832	0.5036	0.7821
NW_003728862.1	5622	2391	0.4253	0.6686
NW_003728863.1	5618	1936	0.3446	0.5881
NW_003728864.1	5617	2403	0.4278	0.5864
NW_003728865.1	5614	2690	0.4792	0.7698
NW_003728866.1	5614	2391	0.4259	0.5109
NW_003728867.1	5610	3267	0.5824	0.8231
NW_003728868.1	5605	2698	0.4814	0.7067
NW_003728869.1	5594	3560	0.6364	0.8633
NW_003728870.1	5588	2688	0.481	0.6856
NW_003728871.1	5584	4493	0.8046	0.9272
NW_003728872.1	5582	3849	0.6895	0.7634
NW_003728873.1	5579	2096	0.3757	0.5334
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NW_003728875.1	5577	2396	0.4296	0.7033
NW_003728876.1	5577	2400	0.4303	0.5732
NW_003728877.1	5571	1798	0.3227	0.4761
NW_003728878.1	5570	2383	0.4278	0.6292
NW_003728879.1	5557	1778	0.32	0.4998
NW_003728880.1	5556	3280	0.5904	0.6952
NW_003728881.1	5554	2685	0.4834	0.7032
NW_003728882.1	5552	2997	0.5398	0.9039
NW_003728883.1	5551	2982	0.5372	0.8018
NW_003728884.1	5551	2674	0.4817	0.6764
NW_003728885.1	5549	2986	0.5381	0.7291
NW_003728886.1	5548	3577	0.6447	0.9508
NW_003728887.1	5547	2095	0.3777	0.5399
NW_003728888.1	5543	2386	0.4305	0.7195
NW_003728889.1	5541	2369	0.4275	0.6077
NW_003728890.1	5541	4095	0.739	0.8335
NW_003728891.1	5531	2968	0.5366	0.687
NW_003728892.1	5522	3586	0.6494	0.7898
NW_003728893.1	5521	3258	0.5901	0.8407
NW_003728894.1	5520	1504	0.2725	0.5326
NW_003728895.1	5517	2098	0.3803	0.6094
NW_003728896.1	5502	5391	0.9798	1.0119
NW_003728897.1	5500	2935	0.5336	0.5811
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NW_003728899.1	5496	2674	0.4865	0.7044
NW_003728900.1	5495	2385	0.434	0.5838
NW_003728901.1	5489	1805	0.3288	0.55
NW_003728902.1	5487	2384	0.4345	0.6359
NW_003728903.1	5487	2423	0.4416	0.6921
NW_003728904.1	5485	2378	0.4335	0.5615
NW_003728905.1	5483	2395	0.4368	0.8618
NW_003728906.1	5481	2390	0.4361	0.6403
NW_003728907.1	5476	3566	0.6512	0.8443
NW_003728908.1	5463	2692	0.4928	0.7086
NW_003728909.1	5460	3001	0.5496	0.6541
NW_003728910.1	5452	2690	0.4934	0.5932
NW_003728911.1	5452	3585	0.6576	0.7119
NW_003728912.1	8038	3917	0.4873	0.8205
NW_003728913.1	5448	2395	0.4396	0.6751
NW_003728914.1	5446	2403	0.4412	0.6023
NW_003728915.1	5442	2995	0.5503	0.6746
NW_003728916.1	5442	3599	0.6613	0.8914
NW_003728917.1	5440	2092	0.3846	0.685
NW_003728918.1	5438	1486	0.2733	0.7581
NW_003728919.1	5432	2988	0.5501	0.8589
NW_003728920.1	5426	2992	0.5514	0.7488
NW_003728921.1	5425	2082	0.3838	0.674
NW_003728922.1	5421	2997	0.5529	0.7981
NW_003728923.1	5416	2693	0.4972	0.742
NW_003728924.1	5415	2983	0.5509	0.64
NW_003728925.1	5411	2388	0.4413	0.6965
NW_003728926.1	5407	2361	0.4367	0.7117
NW_003728927.1	5406	1951	0.3609	0.5699
NW_003728928.1	5404	3293	0.6094	0.835
NW_003728929.1	5403	2697	0.4992	0.746
NW_003728930.1	5401	1802	0.3336	0.6161
NW_003728931.1	5401	2398	0.444	0.7209
NW_003728932.1	5399	2651	0.491	0.9407
NW_003728933.1	5397	2994	0.5548	0.6228
NW_003728934.1	5397	2701	0.5005	0.7327
NW_003728935.1	5395	2390	0.443	0.6032
NW_003728936.1	5797	3895	0.6719	0.8673
NW_003728937.1	5391	2671	0.4955	0.6454
NW_003728938.1	5388	2999	0.5566	0.6902
NW_003728939.1	5386	1793	0.3329	0.5239
NW_003728940.1	5379	2088	0.3882	0.5168
NW_003728941.1	5378	2100	0.3905	0.576
NW_003728942.1	5367	3287	0.6124	0.9637
NW_003728943.1	5366	2699	0.503	0.7763
NW_003728944.1	5363	2691	0.5018	0.5377
NW_003728945.1	5360	1789	0.3338	0.6095
NW_003728946.1	5356	2094	0.391	0.613
NW_003728947.1	5350	2401	0.4488	0.6414
NW_003728948.1	5343	2080	0.3893	0.826
NW_003728949.1	5343	2989	0.5594	0.7135
NW_003728950.1	5341	2098	0.3928	0.6219
NW_003728951.1	5332	2096	0.3931	0.6024
NW_003728952.1	5330	2704	0.5073	0.6677
NW_003728953.1	5328	2993	0.5617	0.7317
NW_003728954.1	5326	2091	0.3926	0.8539
NW_003728955.1	5323	2998	0.5632	0.7207
NW_003728956.1	5322	2391	0.4493	0.6772
NW_003728957.1	5321	3152	0.5924	0.8007
NW_003728958.1	6845	3290	0.4806	0.754
NW_003728959.1	5317	2384	0.4484	0.6663
NW_003728960.1	5307	2374	0.4473	0.7457
NW_003728961.1	5303	3003	0.5663	0.8952
NW_003728962.1	5302	2385	0.4498	0.7341
NW_003728963.1	5298	1480	0.2794	0.5295
NW_003728964.1	5295	2698	0.5095	0.7208
NW_003728965.1	5295	1791	0.3382	0.6963
NW_003728966.1	5292	3874	0.732	0.9616
NW_003728967.1	5292	3886	0.7343	0.971
NW_003728968.1	5292	3009	0.5686	0.6807
NW_003728969.1	5291	2986	0.5644	0.7785
NW_003728970.1	5290	3295	0.6229	0.6824
NW_003728971.1	5289	1800	0.3403	0.5694
NW_003728972.1	5289	2676	0.506	0.6391
NW_003728973.1	5288	2714	0.5132	0.6831
NW_003728974.1	5283	2356	0.446	0.6094
NW_003728975.1	5277	2703	0.5122	0.6267
NW_003728976.1	5276	2687	0.5093	0.684
NW_003728977.1	5272	2987	0.5666	0.7638
NW_003728978.1	5264	2386	0.4533	0.6459
NW_003728979.1	5262	2987	0.5677	0.6671
NW_003728980.1	5261	2387	0.4537	0.6335
NW_003728981.1	5261	3594	0.6831	0.7037
NW_003728982.1	5258	2690	0.5116	0.5805
NW_003728983.1	5257	2396	0.4558	0.6115
NW_003728984.1	5254	3002	0.5714	0.8481
NW_003728985.1	5253	3141	0.5979	0.7746
NW_003728986.1	5246	2690	0.5128	0.7563
NW_003728987.1	5244	3584	0.6834	0.7226
NW_003728988.1	5243	2702	0.5154	0.6038
NW_003728989.1	5241	3270	0.6239	0.7874
NW_003728990.1	5240	1473	0.2811	0.5542
NW_003728991.1	5235	2676	0.5112	0.6038
NW_003728992.1	5224	2098	0.4016	0.5578
NW_003728993.1	5222	1767	0.3384	0.5143
NW_003728994.1	7721	4165	0.5394	0.7563
NW_003728995.1	5212	2699	0.5178	0.752
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NW_003728997.1	5193	2075	0.3996	0.5629
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NW_003729324.1	3271	1198	0.3662	0.57
NW_003729325.1	3257	1788	0.549	0.8401
NW_003729326.1	3257	1497	0.4596	0.737
NW_003729327.1	3231	1785	0.5525	0.5649
NW_003729328.1	3135	1502	0.4791	0.6365
NW_003729329.1	3134	2385	0.761	0.8076
NW_003729330.1	3059	1499	0.49	0.5371
NW_003729331.1	3011	599	0.1989	0.4056
NW_003729332.1	2997	901	0.3006	0.5632
NW_003729333.1	2955	1194	0.4041	0.4967
NW_003729334.1	2933	590	0.2012	0.4238
NW_003729335.1	2850	1509	0.5295	0.6421
NW_003729336.1	2823	1194	0.423	0.5171
NW_003729337.1	2809	601	0.214	0.4096
NW_003729338.1	2772	1769	0.6382	1.0199
NW_003729339.1	2729	1493	0.5471	0.7315
NW_003729340.1	2708	1206	0.4453	0.6344
NW_003729341.1	2700	601	0.2226	0.4155
NW_003729342.1	2641	1789	0.6774	0.7208
NW_003729343.1	2494	893	0.3581	0.662
NW_003729344.1	2361	896	0.3795	0.5032
NW_003729345.1	2327	1199	0.5153	0.8144
NW_003729346.1	2250	1192	0.5298	0.5036
NW_003729347.1	2145	598	0.2788	0.4484
NW_003729348.1	2046	600	0.2933	0.4612
NW_003729349.1	1999	301	0.1506	0.3571
NW_003729350.1	1819	302	0.166	0.3711
NW_003729351.1	1790	603	0.3369	0.7296
NW_003729352.1	1685	898	0.5329	0.7546
NW_003729353.1	1573	303	0.1926	0.3929
NW_003729354.1	1115	301	0.27	0.443
NC_002008.4	16727	8400	0.5022	0.6777

Input data and parameters

QualiMap command line

Alignment

Summary

Globals

ACGT Content

Coverage

Mapping Quality

Insert size

Mismatches and indels

Chromosome stats

Coverage across reference

Coverage Histogram

Coverage Histogram (0-50X)

Genome Fraction Coverage

Duplication Rate Histogram

Mapped Reads Nucleotide Content

Mapped Reads GC-content Distribution

Mapped Reads Clipping Profile

Homopolymer Indels

Mapping Quality Across Reference

Mapping Quality Histogram

Insert Size Across Reference

Insert Size Histogram

Contents