Opening file /home/mhussien/miniconda3/envs/hend/bin/rnaQUAST_results/results_2023_02_18_16_11_13/tmp/GCA_002284615.2_Dunsal1_v._2_genomic.upper.fna
  Contig MU069436.1: concatenated at chromosome end: MU069436.1:1..1550595 (length = 1550595 nt)
  Contig MU069437.1: concatenated at chromosome end: MU069437.1:1..1463453 (length = 1463453 nt)
  Contig MU069438.1: concatenated at chromosome end: MU069438.1:1..1399564 (length = 1399564 nt)
  Contig MU069439.1: concatenated at chromosome end: MU069439.1:1..1382906 (length = 1382906 nt)
  Contig MU069440.1: concatenated at chromosome end: MU069440.1:1..1158836 (length = 1158836 nt)
  Contig MU069441.1: concatenated at chromosome end: MU069441.1:1..1152632 (length = 1152632 nt)
  Contig MU069442.1: concatenated at chromosome end: MU069442.1:1..1141143 (length = 1141143 nt)
  Contig MU069443.1: concatenated at chromosome end: MU069443.1:1..1125404 (length = 1125404 nt)
  Contig MU069444.1: concatenated at chromosome end: MU069444.1:1..1111679 (length = 1111679 nt)
  Contig MU069445.1: concatenated at chromosome end: MU069445.1:1..1032641 (length = 1032641 nt)
  Contig MU069446.1: concatenated at chromosome end: MU069446.1:1..1027509 (length = 1027509 nt)
  Contig MU069447.1: concatenated at chromosome end: MU069447.1:1..1011327 (length = 1011327 nt)
  Contig MU069448.1: concatenated at chromosome end: MU069448.1:1..1004221 (length = 1004221 nt)
  Processed short contigs (<1000000 nt): ..........
  Contig MU069459.1: concatenated at chromosome end: MU069459.1:1..1289505 (length = 1289505 nt)
  Processed short contigs (<1000000 nt): .........................................................................................More than 100 short contigs.  Will stop printing.

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Contig mapping information has been written to file /home/mhussien/miniconda3/envs/hend/bin/rnaQUAST_results/results_2023_02_18_16_11_13/tmp/GCA_002284615.2_Dunsal1_v._2_genomic.upper.coords.
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No alternate scaffolds observed