METRICS/TRANSCRIPTS                                    transcripts              
 == ALIGNMENT METRICS (calculated with reference genome but without gene database) == 
Transcripts                                            91092                    

Aligned                                                15285                    

Uniquely aligned                                       12426                    
Multiply aligned                                       83                       
Misassembly candidates reported by GMAP (or BLAT)      2595                     

Unaligned                                              75807                    

 == ALIGNMENT METRICS FOR NON-MISASSEMBLED TRANSCRIPTS == 
Average aligned fraction                               0.207                    
Average alignment length                               366.001                  

Average blocks per alignment                           6.236                    
Average block length                                   58.696                   

Average mismatches per transcript                      13.395                   

NA50                                                   756