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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| APS2bed.py | 2017-06-29 13:57 | 205 | |
| APS_Chicken.bed | 2017-06-29 13:59 | 3.2M | |
| APS_Chicken_Sorted.bed | 2017-06-30 10:10 | 3.2M | |
| APScorr.py | 2017-06-30 11:59 | 867 | |
| APSs_Chicken_Biotype.csv | 2017-06-29 13:10 | 5.3M | |
| Aligned_Reads/ | 2017-03-05 22:43 | - | |
| Bed_Files/ | 2016-08-29 14:11 | - | |
| Chromatin_Model/ | 2016-07-17 19:34 | - | |
| Chromatin_Model_Reps/ | 2016-07-11 17:41 | - | |
| Cufflinks_Output/ | 2017-11-11 11:30 | - | |
| Cufflinks_Output_No_GFF/ | 2016-07-05 11:50 | - | |
| DNaseSeq_Adipose_Genes.txt | 2017-11-07 10:45 | 1.4K | |
| DNaseSeq_Cerebellum_Genes.txt | 2017-11-07 10:45 | 2.7K | |
| DNaseSeq_Cortex_Genes.txt | 2017-11-07 10:45 | 15K | |
| DNaseSeq_Hypothalamus_Genes.txt | 2017-11-07 10:47 | 47K | |
| DNaseSeq_Liver_Genes.txt | 2017-11-07 10:47 | 42K | |
| DNaseSeq_Lung_Genes.txt | 2017-11-07 10:47 | 40K | |
| DNaseSeq_Muscle_Genes.txt | 2017-11-07 10:47 | 8.1K | |
| DNaseSeq_Spleen_Genes.txt | 2017-11-07 10:47 | 59K | |
| DeepTools/ | 2017-06-29 10:01 | - | |
| FEELnc/ | 2018-08-14 15:50 | - | |
| Galgal5_genes.gff | 2016-07-20 22:09 | 4.4M | |
| Galgal5_promoters.bed | 2016-07-20 22:10 | 874K | |
| Gene_Expression/ | 2016-09-01 14:14 | - | |
| Genome/ | 2018-04-04 12:39 | - | |
| Intermediate_LncRNA.feelncclassifier.log | 2016-08-12 10:09 | 12K | |
| LivADepth.bed | 2017-06-29 16:10 | 11G | |
| LivADepth.txt | 2017-06-29 15:45 | 7.8G | |
| LivADepthSorted.bed | 2017-06-30 10:08 | 11G | |
| LivAOverlap.bed | 2017-06-30 10:31 | 123M | |
| LncRNA/ | 2018-08-08 11:05 | - | |
| Old_Files/ | 2017-03-05 18:24 | - | |
| Old_Peak_Calls/ | 2016-10-25 14:01 | - | |
| Peak_Calls/ | 2016-10-25 15:47 | - | |
| Peak_Model/ | 2016-07-18 15:45 | - | |
| Raw_Reads/ | 2016-08-29 11:17 | - | |
| Results/ | 2017-03-06 04:53 | - | |
| SNP/ | 2016-09-15 15:16 | - | |
| Temp_Files/ | 2016-07-11 11:48 | - | |
| Tophat_Output/ | 2016-07-15 07:47 | - | |
| adipose-tsi-gene.tsv | 2016-08-16 13:48 | 64K | |
| adipose-tsi-reverse.tsv | 2016-08-24 09:15 | 904K | |
| assembly_list.txt | 2016-07-21 10:37 | 602 | |
| cerebellum-tsi-gene.tsv | 2016-08-16 13:48 | 126K | |
| cerebellum-tsi-reverse.tsv | 2016-08-24 09:15 | 177K | |
| chick_noncode_mapping.txt | 2018-08-13 20:03 | 139K | |
| commands | 2016-07-21 00:17 | 429 | |
| corBprofile.png | 2016-07-20 16:42 | 55K | |
| cortex-tsi-gene.tsv | 2016-08-16 13:48 | 99K | |
| cortex-tsi-reverse.tsv | 2016-08-24 09:15 | 79K | |
| create_promoter_bed.py | 2016-07-20 22:47 | 434 | |
| cuffcmp.combined.gtf | 2016-08-12 13:33 | 8.1M | |
| cuffcmp.loci | 2016-08-12 13:33 | 429K | |
| cuffcmp.stats | 2016-08-12 13:33 | 1.1K | |
| cuffcmp.tracking | 2016-08-12 13:33 | 1.0M | |
| cuffgtf_promoters.py | 2016-07-21 11:09 | 952 | |
| cuffmerge.sh | 2016-07-21 10:45 | 138 | |
| error.log | 2016-08-04 13:35 | 0 | |
| genes.bed | 2016-07-18 11:53 | 741K | |
| genes.gff | 2017-11-07 10:31 | 4.3M | |
| hypothalamus-tsi-gene.tsv | 2016-08-16 13:48 | 117K | |
| hypothalamus-tsi-reverse.tsv | 2016-08-24 09:15 | 44K | |
| job.sh | 2017-06-30 10:12 | 114 | |
| livAprofile.png | 2016-07-20 16:49 | 61K | |
| liver-tsi-gene.tsv | 2016-08-16 13:48 | 103K | |
| liver-tsi-reverse.tsv | 2016-08-24 09:15 | 135K | |
| lncrna.sh | 2017-03-16 11:32 | 1.7K | |
| lung-tsi-gene.tsv | 2016-08-16 13:48 | 132K | |
| lung-tsi-reverse.tsv | 2016-08-24 09:15 | 26K | |
| merged_asm/ | 2016-07-21 10:37 | - | |
| muscle-tsi-gene.tsv | 2016-08-16 13:48 | 88K | |
| muscle-tsi-reverse.tsv | 2016-08-24 09:15 | 106K | |
| noncode.nhr | 2018-04-20 16:23 | 1.0M | |
| noncode.nin | 2018-04-20 16:23 | 151K | |
| noncode.nsq | 2018-04-20 16:23 | 2.5M | |
| noncode_blast.txt | 2018-04-21 00:03 | 2.8M | |
| pipeline-config.txt | 2017-03-05 20:37 | 372 | |
| slurm-13341616.out | 2017-06-29 17:05 | 1.1K | |
| slurm-13378470.out | 2017-06-30 10:12 | 1.0K | |
| slurm-13378517.out | 2017-06-30 10:31 | 892 | |
| spleen-tsi-gene.tsv | 2016-08-16 13:48 | 121K | |
| spleen-tsi-reverse.tsv | 2016-08-24 09:15 | 19K | |
| temp | 2017-02-24 15:04 | 766K | |
| temp.py | 2017-06-29 16:01 | 149 | |
| temp2 | 2017-02-24 15:02 | 887K | |
| test | 2018-04-21 12:22 | 19K | |
| test.mat.gz | 2016-07-18 12:08 | 73M | |
| test.png | 2017-06-30 11:59 | 119K | |
| test.txt | 2016-07-18 12:34 | 483M | |
| test2 | 2017-01-09 14:56 | 547M | |
| test_job.sh | 2016-07-18 11:36 | 312 | |
| tophat_out/ | 2016-07-01 21:13 | - | |