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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| Aligned_Reads/ | 2017-06-14 16:33 | - | |
| Bed_Files/ | 2017-02-22 20:20 | - | |
| ChromHMM/ | 2017-07-11 19:27 | - | |
| ChromHMM2/ | 2017-07-11 16:09 | - | |
| Cufflinks_Output/ | 2017-02-22 15:24 | - | |
| DeepTools/ | 2017-10-30 21:00 | - | |
| Enhancers/ | 2017-07-30 12:03 | - | |
| Figures/ | 2017-10-30 20:57 | - | |
| Gene_Expression/ | 2017-02-21 13:45 | - | |
| Genome/ | 2017-07-24 13:25 | - | |
| IDR/ | 2017-10-30 21:44 | - | |
| Logs/ | 2017-10-30 21:34 | - | |
| Macs2/ | 2017-10-30 21:06 | - | |
| Metrics/ | 2017-10-30 20:56 | - | |
| Old_Peak_Calls/ | 2017-06-02 14:42 | - | |
| Peak_Calls/ | 2017-10-25 18:48 | - | |
| Raw_Reads/ | 2017-06-09 15:03 | - | |
| Results/ | 2017-06-15 12:12 | - | |
| StringTie/ | 2017-11-14 12:42 | - | |
| Tables/ | 2017-10-30 20:56 | - | |
| Temp_Files/ | 2017-02-17 16:30 | - | |
| Test_GC/ | 2017-06-08 15:02 | - | |
| Tophat_Output/ | 2017-02-17 16:31 | - | |
| tophat_out/ | 2017-02-17 16:29 | - | |
| H3K4me3 | 2017-05-31 14:59 | 0 | |
| H3K4me3_Liver_Motifs.txt | 2017-03-10 13:38 | 0 | |
| corr_Liver_P348.txt | 2017-11-14 13:19 | 0 | |
| corr_Lung_P348.txt | 2017-11-14 13:19 | 0 | |
| corr_Spleen_P348.txt | 2017-11-14 13:19 | 0 | |
| sicer_H3K27me3_Lung_Combined.bed | 2017-02-21 13:52 | 0 | |
| test.sh | 2017-02-28 16:47 | 19 | |
| gapdhprimer.bed | 2017-05-04 14:03 | 30 | |
| hoxc4primer.bed | 2017-05-04 14:07 | 30 | |
| hoxb5primer.bed | 2017-05-04 14:11 | 31 | |
| trx1primer.bed | 2017-05-04 14:05 | 31 | |
| output.txt | 2017-10-16 13:03 | 84 | |
| tissuespecificpromoters.py | 2017-02-21 10:56 | 128 | |
| corr_Liver_P350.txt | 2017-11-14 13:20 | 172 | |
| corr_Lung_P350.txt | 2017-11-14 13:21 | 172 | |
| corr_Spleen_P350.txt | 2017-11-14 13:21 | 172 | |
| corr.sh | 2017-11-14 13:19 | 219 | |
| diffsets.py | 2017-02-24 10:25 | 220 | |
| run.sh | 2017-03-10 13:38 | 277 | |
| test.py | 2017-06-22 13:08 | 299 | |
| runsicer.sh | 2017-02-20 13:38 | 363 | |
| config.yaml | 2017-10-30 20:56 | 397 | |
| pipeline-config.txt | 2017-06-14 14:10 | 433 | |
| convert_tss.py | 2017-11-14 12:42 | 451 | |
| peakexpcorr.py | 2017-06-12 11:54 | 641 | |
| test_signal_corr.py | 2017-11-14 13:12 | 702 | |
| slurm-17375423.out | 2017-10-25 17:27 | 937 | |
| Lung_ST6GAL1_Enhancers.fa | 2017-07-31 10:00 | 971 | |
| slurm-17482015.out | 2017-11-14 13:20 | 1.1K | |
| slurm-17482017.out | 2017-11-14 13:20 | 1.1K | |
| slurm-17482024.out | 2017-11-14 13:21 | 1.1K | |
| slurm-17482022.out | 2017-11-14 13:21 | 1.1K | |
| slurm-17482013.out | 2017-11-14 13:20 | 1.1K | |
| slurm-17482020.out | 2017-11-14 13:21 | 1.1K | |
| slurm-17482023.out | 2017-11-14 13:21 | 1.6K | |
| slurm-17482025.out | 2017-11-14 13:21 | 1.6K | |
| slurm-17482021.out | 2017-11-14 13:20 | 1.6K | |
| slurm-17482016.out | 2017-11-14 13:19 | 1.6K | |
| slurm-17482018.out | 2017-11-14 13:19 | 1.6K | |
| slurm-17482014.out | 2017-11-14 13:19 | 1.6K | |
| Macs2_All_H3K27me3.txt | 2017-02-24 10:32 | 4.3K | |
| H3K4me3_Lung_Specific_Promoters.txt | 2017-02-21 11:01 | 4.8K | |
| Macs2_All_Both.txt | 2017-02-24 10:34 | 4.9K | |
| H3K4me3_Spleen_Specific_Promoters.txt | 2017-02-21 11:02 | 6.3K | |
| macs2_spleen.png | 2017-02-24 10:38 | 8.6K | |
| spleen.png | 2017-02-24 10:39 | 8.7K | |
| slurm-13576666.out | 2017-07-12 16:00 | 8.7K | |
| slurm-13576667.out | 2017-07-12 15:59 | 8.7K | |
| lung.png | 2017-02-24 10:40 | 8.7K | |
| H3K27me3_Lung_Specific_Promoters.txt | 2017-02-21 11:03 | 8.7K | |
| macs2_lung.png | 2017-02-24 10:38 | 8.7K | |
| liver.png | 2017-02-22 14:32 | 9.2K | |
| macs2_liver.png | 2017-02-24 10:37 | 9.2K | |
| slurm-12833000.out | 2017-06-14 14:42 | 12K | |
| H3K4me3_Liver_Specific_Promoters.txt | 2017-02-21 11:00 | 15K | |
| Macs2_Both_Spleen_Promoters.txt | 2017-02-24 10:31 | 16K | |
| H3K27me3_Liver_Specific_Promoters.txt | 2017-02-21 11:03 | 16K | |
| H3K27me3_Spleen_Specific_Promoters.txt | 2017-02-21 11:03 | 18K | |
| slurm-12837415.out | 2017-06-15 12:12 | 18K | |
| Macs2_Both_Liver_Promoters.txt | 2017-02-24 10:30 | 21K | |
| Macs2_Only_H3K27me3_Spleen_Promoters.txt | 2017-02-24 10:28 | 22K | |
| Macs2_Both_Lung_Promoters.txt | 2017-02-24 10:30 | 27K | |
| slurm-17375424.out | 2017-10-25 17:29 | 32K | |
| Macs2_Only_H3K27me3_Lung_Promoters.txt | 2017-02-24 10:28 | 34K | |
| slurm-17386811.out | 2017-10-30 21:08 | 34K | |
| slurm-17375425.out | 2017-10-25 18:52 | 35K | |
| Both_All_Promoters.txt | 2017-02-21 10:51 | 37K | |
| Macs2_H3K27me3_Spleen_Promoters.txt | 2017-02-24 10:15 | 37K | |
| Macs2_Only_H3K27me3_Liver_Promoters.txt | 2017-02-24 10:28 | 37K | |
| Both_Liver_Promoters.txt | 2017-02-21 10:40 | 40K | |
| output.png | 2017-10-16 13:03 | 45K | |
| Only_H3K27me3_All_Promoters.txt | 2017-02-21 10:50 | 46K | |
| Both_Lung_Promoters.txt | 2017-02-21 10:40 | 46K | |
| Both_Spleen_Promoters.txt | 2017-02-21 10:40 | 47K | |
| plot.png | 2017-06-07 20:41 | 52K | |
| slurm-17387302.out | 2017-10-30 21:45 | 53K | |
| plot2.png | 2017-06-07 21:15 | 53K | |
| Macs2_H3K27me3_Liver_Promoters.txt | 2017-02-24 10:15 | 58K | |
| Macs2_H3K27me3_Lung_Promoters.txt | 2017-02-24 10:15 | 60K | |
| Only_H3K27me3_Lung_Promoters.txt | 2017-02-21 10:45 | 64K | |
| Only_H3K27me3_Liver_Promoters.txt | 2017-02-21 10:46 | 76K | |
| Only_H3K27me3_Spleen_Promoters.txt | 2017-02-21 10:45 | 76K | |
| input_pearson.png | 2017-10-04 13:01 | 79K | |
| input_spearman.png | 2017-10-04 13:01 | 79K | |
| Liver_P348_Enrichment.png | 2017-06-07 15:56 | 106K | |
| slurm-12667870.out | 2017-06-07 17:10 | 110K | |
| H3K27me3_Lung_Promoters.txt | 2017-02-21 10:39 | 111K | |
| H3K27me3_Liver_Promoters.txt | 2017-02-21 10:39 | 116K | |
| H3K27me3_Spleen_Promoters.txt | 2017-02-21 10:38 | 123K | |
| Only_H3K4me3_Spleen_Promoters.txt | 2017-02-21 10:45 | 125K | |
| slurm-12833122.out | 2017-06-14 17:04 | 126K | |
| Only_H3K4me3_Lung_Promoters.txt | 2017-02-21 10:44 | 127K | |
| Only_H3K4me3_Liver_Promoters.txt | 2017-02-21 10:44 | 138K | |
| Macs2_Only_H3K4me3_Lung_Promoters.txt | 2017-02-24 10:27 | 147K | |
| Only_H3K4me3_All_Promoters.txt | 2017-02-21 10:50 | 153K | |
| Macs2_Only_H3K4me3_Spleen_Promoters.txt | 2017-02-24 10:27 | 156K | |
| Macs2_Only_H3K4me3_Liver_Promoters.txt | 2017-02-24 10:27 | 157K | |
| H3K4me3_Spleen_Promoters.txt | 2017-02-21 10:26 | 172K | |
| H3K4me3_Lung_Promoters.txt | 2017-02-21 10:26 | 173K | |
| H3K4me3_Liver_Promoters.txt | 2017-02-21 10:26 | 178K | |
| Macs2_All_H3K4me3.txt | 2017-02-24 10:32 | 178K | |
| Only_Macs2_H3K27me3_Liver_Promoters.txt | 2017-02-24 10:17 | 194K | |
| genes_with_h3k4me3_liver_p348.txt | 2017-06-22 13:06 | 226K | |
| peaksizes.txt | 2017-06-02 12:46 | 226K | |
| 01270341402.group | 2017-03-10 13:39 | 768K | |
| 01736883185.group | 2017-03-10 13:30 | 768K | |
| promoters.bed | 2017-02-21 10:23 | 1.0M | |
| sicer_H3K27me3_Liver_Combined.bed | 2017-02-21 13:51 | 1.6M | |
| test | 2017-02-21 13:50 | 1.7M | |
| inputs.npz | 2017-10-04 11:55 | 4.6M | |
| temp_Liver_P350 | 2017-11-14 13:20 | 7.5M | |
| temp | 2017-11-14 12:43 | 7.8M | |
| temp_Liver_P348 | 2017-11-14 13:20 | 7.8M | |
| temp_Spleen_P350 | 2017-11-14 13:20 | 14M | |
| temp_Spleen_P348 | 2017-11-14 13:20 | 16M | |
| temp_Lung_P350 | 2017-11-14 13:21 | 17M | |
| temp_Lung_P348 | 2017-11-14 13:21 | 18M | |
| 01270341402.seq | 2017-03-10 13:39 | 34M | |
| 01736883185.seq | 2017-03-10 13:30 | 34M | |
| H3K4me3_Liver_Seqs.fa | 2017-03-10 10:53 | 34M | |